PDB entry 3dh7

View 3dh7 on RCSB PDB site
Description: Structure of T. thermophilus IDI-2 in complex with PPi
Class: isomerase
Keywords: Crystal structure, IDI, complex, Isomerase, Plasmid
Deposited on 2008-06-17, released 2008-09-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.97 Å
R-factor: 0.215
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Gene: TTHB110
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dh7a_
  • Chain 'B':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Gene: TTHB110
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dh7b_
  • Chain 'C':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Gene: TTHB110
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dh7c_
  • Chain 'D':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Gene: TTHB110
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3dh7d_
  • Heterogens: FMN, POP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dh7A (A:)
mnirerkrkhleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkap
fligamtggeengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkall
ianlglaqlrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellpl
pfpvmvkevghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceig
iptarailevrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaerva
awigdyleelrtalfaigarnpkeargrverv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dh7A (A:)
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkallianlglaqlrrygr
ddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghgls
reaalalrdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevl
phlplvasggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtal
faigarnpkeargrverv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dh7B (B:)
mnirerkrkhleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkap
fligamtggeengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkall
ianlglaqlrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellpl
pfpvmvkevghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceig
iptarailevrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaerva
awigdyleelrtalfaigarnpkeargrverv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dh7B (B:)
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkallianlglaqlrrygr
ddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghgls
reaalalrdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevl
phlplvasggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtal
faigarnpkeargrverv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dh7C (C:)
mnirerkrkhleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkap
fligamtggeengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkall
ianlglaqlrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellpl
pfpvmvkevghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceig
iptarailevrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaerva
awigdyleelrtalfaigarnpkeargrverv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dh7C (C:)
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpealrrvrkvapkallianlglaqlrrygrdd
llrlvemleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsre
aalalrdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevlph
lplvasggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtalfa
igarnpkeargrverv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3dh7D (D:)
mnirerkrkhleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkap
fligamtggeengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkall
ianlglaqlrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellpl
pfpvmvkevghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceig
iptarailevrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaerva
awigdyleelrtalfaigarnpkeargrverv

    Sequence, based on observed residues (ATOM records): (download) 
    >3dh7D (D:)
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpeavrkvapkallianlglaqlrrygrddllr
lvemleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsreaal
alrdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevlphlpl
vasggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtalfaiga
rnpkeargrverv