PDB entry 3dgs

View 3dgs on RCSB PDB site
Description: Changing the determinants of protein stability from covalent to non-covalent interactions by in-vitro evolution: a structural and energetic analysis
Class: viral protein
Keywords: protein stabilization, dissulfide bonds, evolutionary protein design, phage gene-3-protein, phage display, Capsid protein, Phage recognition, Virion, VIRAL PROTEIN
Deposited on 2008-06-16, released 2008-07-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-05-16, with a file datestamp of 2012-05-11.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.216
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Coat protein A
    Species: Bacteriophage fd [TaxId:10864]
    Gene: III
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03661 (Start-217)
      • engineered (11)
      • engineered (13)
      • engineered (15)
      • engineered (29)
      • engineered (36)
      • engineered (39)
      • engineered (46)
      • engineered (53)
      • engineered (55-56)
      • engineered (60)
      • engineered (101)
      • engineered (129)
      • engineered (138)
      • engineered (188)
      • engineered (199)
      • engineered (201)
      • engineered (207)
      • engineered (209)
      • expression tag (218)
    Domains in SCOPe 2.08: d3dgsa1, d3dgsa2, d3dgsa3
  • Chain 'B':
    Compound: Coat protein A
    Species: Bacteriophage fd [TaxId:10864]
    Gene: III
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03661 (Start-217)
      • engineered (7)
      • engineered (11)
      • engineered (13)
      • engineered (15)
      • engineered (29)
      • engineered (36)
      • engineered (39)
      • engineered (46)
      • engineered (53)
      • engineered (55-56)
      • engineered (60)
      • engineered (101)
      • engineered (129)
      • engineered (138)
      • engineered (188)
      • engineered (199)
      • engineered (201)
      • engineered (207)
      • engineered (209)
    Domains in SCOPe 2.08: d3dgsb1, d3dgsb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dgsA (A:)
maetvesslakshiegsftnvwkddktldwyanyegilwkatgvvvitgdetqvyaiwvp
vglaipenegggsegggsegggsegggtkppeygdtpipgyiyinpldgtyppgteqnpa
npnpsleeshplntfmfqgnrfrnrqgaltvytgtvtqgtdpvktyyqytpvsskamyda
ywngkfrdvafhsgfnedplvaeyqgqlsylpqppvnapsghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dgsA (A:)
kshiegsftnvwkddktldwyanyegilwkatgvvvitgdetqvyaiwvpvglaipeney
gdtpipgyiyinpldgtyppgteqnpanpnpsleeshplntfmfqgnrfrnrqgaltvyt
gtvtqgtdpvktyyqytpvsskamydaywngkfrdvafhsgfnedplvaeyqgqlsylpq
ppvnap

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dgsB (B:)
maetvesslakshiegsftnvwkddktldwyanyegilwkatgvvvitgdetqvyaiwvp
vglaipenegggsegggsegggsegggtkppeygdtpipgyiyinpldgtyppgteqnpa
npnpsleeshplntfmfqgnrfrnrqgaltvytgtvtqgtdpvktyyqytpvsskamyda
ywngkfrdvafhsgfnedplvaeyqgqlsylpqppvnapsghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dgsB (B:)
esslakshiegsftnvwkddktldwyanyegilwkatgvvvitgdetqvyaiwvpvglai
pgdtpipgyiyinpldgtyppgteqnpanpnpsleeshplntfmfqgnrfrnrqgaltvy
tgtvtqgtdpvktyyqytpvsskamydaywngkfrdvafhsgfnedplvaeyqgqlsylp
qppvna