PDB entry 3dgd
View 3dgd on RCSB PDB site
Description: Crystal structure of the F87M/L110M mutant of human transthyretin at pH 4.6
Class: ligand binding protein
Keywords: transthyretin, monomer, amyloidogenic intermediate, acidic ph, thyroid hormone binding protein, ligand binding protein
Deposited on
2008-06-13, released
2008-07-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 1.38 Å
R-factor: 0.159
AEROSPACI score: 0.7
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Gene: TTR, PLAB
Database cross-references and differences (RAF-indexed):
- Uniprot P02766
- engineered (86)
- engineered (109)
Domains in SCOPe 2.08: d3dgda_ - Chain 'B':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Gene: TTR, PLAB
Database cross-references and differences (RAF-indexed):
- Uniprot P02766
- engineered (86)
- engineered (109)
Domains in SCOPe 2.08: d3dgdb_ - Chain 'C':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Gene: TTR, PLAB
Database cross-references and differences (RAF-indexed):
- Uniprot P02766
- engineered (86)
- engineered (109)
Domains in SCOPe 2.08: d3dgdc_ - Chain 'D':
Compound: Transthyretin
Species: Homo sapiens [TaxId:9606]
Gene: TTR, PLAB
Database cross-references and differences (RAF-indexed):
- Uniprot P02766
- engineered (86)
- engineered (109)
Domains in SCOPe 2.08: d3dgdd_ - Heterogens: ZN, ACT, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3dgdA (A:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltt
eeefvegiykveidtksywkalgispmhehaevvftandsgprrytiaamlspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3dgdA (A:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltteeefvegiy
kveidtksywkalgispmhehaevvftandsgprrytiaamlspysysttavvtnp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3dgdB (B:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltt
eeefvegiykveidtksywkalgispmhehaevvftandsgprrytiaamlspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3dgdB (B:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltteeefvegiy
kveidtksywkalgispmhehaevvftandsgprrytiaamlspysysttavvtn
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3dgdC (C:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltt
eeefvegiykveidtksywkalgispmhehaevvftandsgprrytiaamlspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3dgdC (C:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltteeefvegiy
kveidtksywkalgispmhehaevvftandsgprrytiaamlspysysttavvtnp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3dgdD (D:)
gptgtgeskcplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltt
eeefvegiykveidtksywkalgispmhehaevvftandsgprrytiaamlspysystta
vvtnpke
Sequence, based on observed residues (ATOM records): (download)
>3dgdD (D:)
cplmvkvldavrgspainvavhvfrkaaddtwepfasgktsesgelhgltteeefvegiy
kveidtksywkalgispmhehaevvftandsgprrytiaamlspysysttavvtn