PDB entry 3ddy

View 3ddy on RCSB PDB site
Description: structure of lumazine protein, an optical transponder of luminescent bacteria
Deposited on 2008-06-07, released 2008-07-01
The last revision was dated 2021-11-10, with a file datestamp of 2021-11-05.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.21
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lumazine protein
    Species: Photobacterium leiognathi [TaxId:658]
    Gene: lumP
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q06877 (0-185)
      • engineered mutation (48)
  • Heterogens: RBF, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3ddyA (A:)
mfrgivqgrgvirsisksedsqrhgiafpegmfqlvdvdtvmlvngcsntvvrilgdmvy
fdidqalgtttfdglkegdqvnleihpkfgevvgrggltgnikgtalvaaieendagfsv
lidipkglaenltvkddigidgislpitdmsdsiitlnysrdllastniaslakdvkvnv
eilnew

    Sequence, based on observed residues (ATOM records):
    >3ddyA (A:)
mfrgivqgrgvirsisksedsqrhgiafpegmfqlvdvdtvmlvngcsntvvrilgdmvy
fdidqalgtttfdglkegdqvnleihpgltgnikgtalvaaieendagfsvlidipkgla
enltvkddigidgislpitdmsdsiitlnysrdllastniaslakdvkvnveiln