PDB entry 3ddo

View 3ddo on RCSB PDB site
Description: X-RAY Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with by Phosphate Ion at 1.5A Resolution
Class: transferase
Keywords: TRANSFERASE, Cytoplasm, Glycosyltransferase
Deposited on 2008-06-06, released 2009-06-09
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-06-09, with a file datestamp of 2009-06-05.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.169
AEROSPACI score: 0.64 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Salmonella typhimurium [TaxId:602]
    Gene: udp, STM3968, STMD1.21
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3ddoa_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Salmonella typhimurium [TaxId:602]
    Gene: udp, STM3968, STMD1.21
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3ddob_
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: Salmonella typhimurium [TaxId:602]
    Gene: udp, STM3968, STMD1.21
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3ddoc_
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: Salmonella typhimurium [TaxId:602]
    Gene: udp, STM3968, STMD1.21
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3ddod_
  • Chain 'E':
    Compound: Uridine phosphorylase
    Species: Salmonella typhimurium [TaxId:602]
    Gene: udp, STM3968, STMD1.21
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3ddoe_
  • Chain 'F':
    Compound: Uridine phosphorylase
    Species: Salmonella typhimurium [TaxId:602]
    Gene: udp, STM3968, STMD1.21
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3ddof_
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ddoA (A:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3ddoA (A:)
sdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkavi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
apmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqkqtshavkivveaarrll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ddoB (B:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3ddoB (B:)
ksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkav
ivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslh
fapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkg
smeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipteshavkivveaa
rrll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ddoC (C:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3ddoC (C:)
sksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgka
vivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgasl
hfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfk
gsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqnaetmkqteshavki
vveaarrll

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ddoD (D:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3ddoD (D:)
ksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkav
ivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslh
fapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkg
smeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqteshav
kivveaarrll

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3ddoE (E:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3ddoE (E:)
sdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkavi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
apmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqqkqteshavkivveaarr
ll

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3ddoF (F:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >3ddoF (F:)
sdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkavi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
apmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnashavkivveaar
rll