PDB entry 3ddl

View 3ddl on RCSB PDB site
Description: Crystallographic Structure of Xanthorhodopsin, a Light-Driven Ion Pump with Dual Chromophore
Class: transport protein
Keywords: rhodopsin, carotenoid, ion pump, light-harvesting, antenna, retinal, TRANSPORT PROTEIN
Deposited on 2008-06-05, released 2008-10-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-06-08, with a file datestamp of 2016-06-03.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Xanthorhodopsin
    Species: Salinibacter ruber [TaxId:146919]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ddla_
  • Chain 'B':
    Compound: Xanthorhodopsin
    Species: Salinibacter ruber [TaxId:146919]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ddlb_
  • Heterogens: SXN, UNL, RET, PX4, PCW, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ddlA (A:)
mlqelptltpgqyslvfnmfsftvatmtasfvffvlarnnvapkyrismmvsalvvfiag
yhyfritssweaayalqngmyqptgelfndayryvdwlltvplltvelvlvmglpknerg
plaaklgflaalmivlgypgevsenaalfgtrglwgflstipfvwilyilftqlgdtiqr
qssrvstllgnarllllatwgfypiaymipmafpeafpsntpgtivalqvgytiadvlak
agygvliyniakakseeegfnvsemvepatasa

    Sequence, based on observed residues (ATOM records): (download) 
    >3ddlA (A:)
elptltpgqyslvfnmfsftvatmtasfvffvlarnnvapkyrismmvsalvvfiagyhy
fritssweaayalqngmyqptgelfndayryvdwlltvplltvelvlvmglpknergpla
aklgflaalmivlgypgevsenaalfgtrglwgflstipfvwilyilftqlgdtiqrqss
rvstllgnarllllatwgfypiaymipmpsntpgtivalqvgytiadvlakagygvliyn
iakakseeegfn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ddlB (B:)
mlqelptltpgqyslvfnmfsftvatmtasfvffvlarnnvapkyrismmvsalvvfiag
yhyfritssweaayalqngmyqptgelfndayryvdwlltvplltvelvlvmglpknerg
plaaklgflaalmivlgypgevsenaalfgtrglwgflstipfvwilyilftqlgdtiqr
qssrvstllgnarllllatwgfypiaymipmafpeafpsntpgtivalqvgytiadvlak
agygvliyniakakseeegfnvsemvepatasa

    Sequence, based on observed residues (ATOM records): (download) 
    >3ddlB (B:)
lptltpgqyslvfnmfsftvatmtasfvffvlarnnvapkyrismmvsalvvfiagyhyf
ritssweaayalqngmyqptgelfndayryvdwlltvplltvelvlvmglpknergplaa
klgflaalmivlgypgevsenaalfgtrglwgflstipfvwilyilftqlgdtiqrqssr
vstllgnarllllatwgfypiaymipmantpgtivalqvgytiadvlakagygvliynia
kakseeegfn