PDB entry 3dco

View 3dco on RCSB PDB site
Description: drosophila nod (3dc4) and bovine tubulin (1jff) docked into the 11- angstrom cryo-em map of nucleotide-free nod complexed to the microtubule
Deposited on 2008-06-04, released 2009-02-10
The last revision was dated 2018-07-18, with a file datestamp of 2018-07-13.
Experiment type: EM
Resolution: 11 Å
R-factor: N/A
AEROSPACI score: -0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Bovine Alpha Tubulin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DCO
  • Chain 'B':
    Compound: Bovine Beta Tubulin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DCO
  • Chain 'N':
    Compound: Kinesin-like protein Nod
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: CG1763, nod, NODA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18105 (Start-332)
      • expression tag (333-338)
  • Heterogens: MG, ADP, ZN, GTP, GDP, TA1

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3dcoA (A:)
mrecisihvgqagvqignacwelyclehgiqpdgqmpsdktigggddsfntffsetgagk
hvpravfvdleptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvld
rirkladqctglqgfsvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvsta
vvepynsiltthttlehsdcafmvdneaiydicrrnldierptytnlnrligqivssita
slrfdgalnvdltefqtnlvpyprghfplatyapvisaekayheqlsvaeitnacfepan
qmvkcdprhgkymaccllyrgdvvpkdvnaaiatiktkrtiqfvdwcptgfkvginyepp
tvvpggdlakvqravcmlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefse
aredmaalekdyeevgvdsvegegeeegeey

    Sequence, based on observed residues (ATOM records):
    >3dcoA (A:)
recisihvgqagvqignacwelyclehgiqpdghvpravfvdleptvidevrtgtyrqlf
hpeqlitgkedaannyarghytigkeiidlvldrirkladqctglqgfsvfhsfgggtgs
gftsllmerlsvdygkksklefsiypapqvstavvepynsiltthttlehsdcafmvdne
aiydicrrnldierptytnlnrligqivssitaslrfdgalnvdltefqtnlvpyprghf
platyapvisaekayheqlsvaeitnacfepanqmvkcdprhgkymaccllyrgdvvpkd
vnaaiatiktkrtiqfvdwcptgfkvginyepptvvpggdlakvqravcmlsnttaiaea
warldhkfdlmyakrafvhwyvgegmeegefsearedmaalekdyeevgvds

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3dcoB (B:)
mreivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneaagnkyv
prailvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvv
rkesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvvpspkvsdtvv
epynatlsvhqlventdetycidnealydicfrtlklttptygdlnhlvsatmsgvttcl
rfpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdaknmm
aacdprhgryltvaavfrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprg
lkmsatfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvs
eyqqyqdatadeqgefeeegeedea

    Sequence, based on observed residues (ATOM records):
    >3dcoB (B:)
reivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneaagnkyvp
railvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvvr
kesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvvpspkvsdtvve
pynatlsvhqlventdetycidnealydicfrtlklttptygdlnhlvsatmsgvttclr
fpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdaknmma
acdprhgryltvaavfrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprgl
kmsatfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvse
yqqyqd

  • Chain 'N':
    Sequence, based on SEQRES records:
    >3dcoN (N:)
masdykddddkrrrgmegaklsavriavreapyrqflgrrepsvvqfppwsdgkslivdq
nefhfdhafpatisqdemyqalilplvdkllegfqctalaygqtgtgksysmgmtppgei
lpehlgilpralgdifervtarqennkdaiqvyasfieiynekpfdllgstphmpmvaar
cqrctclplhsqadlhhilelgtrnrrvrptnmnsnssrshaivtihvkskthhsrmniv
dlagsegvrrtghegvarqegvninlgllsinkvvmsmaaghtvipyrdsvlttvlqasl
taqsyltflacisphqcdlsetlstlrfgtsakaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >3dcoN (N:)
aklsavriavreapyrpsvvqfppwsdgkslivdqnefhfdhafpatisqdemyqalilp
lvdkllegfqctalaygqtgtgksysmgmtppgeilpehlgilpralgdifervtarqen
nkdaiqvyasfieiynekpfdllgstphmpmvaarcqrctclplhsqadlhhilelgtrn
rrsrshaivtihvkskthhsrmnivdlagsegvvninlgllsinkvvmsmaaghtvipyr
dsvlttvlqasltaqsyltflacisphqcdlsetlstlrfgtsakaaaleh