PDB entry 3dah

View 3dah on RCSB PDB site
Description: 2.3 A crystal structure of ribose-phosphate pyrophosphokinase from Burkholderia pseudomallei
Class: transferase
Keywords: BURKHOLDERIA, PSEUDOMALLEI, RIBOSE, PHOSPHATE, PYROPHOSPHOKINASE, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, Magnesium, Metal binding, Nucleotide biosynthesis, Transferase
Deposited on 2008-05-29, released 2008-06-10
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.208
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribose-phosphate pyrophosphokinase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: prsA, BURPS1710b_0753
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3daha1, d3daha2
  • Chain 'B':
    Compound: Ribose-phosphate pyrophosphokinase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: prsA, BURPS1710b_0753
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3dahb1, d3dahb2
  • Chain 'C':
    Compound: Ribose-phosphate pyrophosphokinase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: prsA, BURPS1710b_0753
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3dahc1, d3dahc2
  • Heterogens: PO4, AMP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dahA (A:)
smsshdglmvftgnanpalaqevvkilgiplgkamvsrfsdgeiqveiqenvrgkdvfvl
qstcaptndnlmelmimvdalkrasagritaaipyfgyarqdrrprsarvaisakvvanm
leiagveriitmdlhadqiqgffdipvdniyatpillgdlrkqnypdllvvspdvggvvr
aralakqlncdlaiidkrrpkanvaevmniigevegrtcvimddmvdtagtlckaaqvlk
ergakqvfayathpvlsggaadriaasaldelvvtdtiplsaeslacpkiralssaglla
etfsrirrgdsvmslfaes

    Sequence, based on observed residues (ATOM records): (download) 
    >3dahA (A:)
dglmvftgnanpalaqevvkilgiplgkamvsrfsdgeiqveiqenvrgkdvfvlqstca
ptndnlmelmimvdalkrasagritaaipyfgyarqdrrprsarvaisakvvanmleiag
veriitmdlhadqiqgffdipvdniyatpillgdlrkqnypdllvvspdvggvvrarala
kqlncdlaiegrtcvimddmvdtagtlckaaqvlkergakqvfayathpvlsggaadria
asaldelvvtdtiplsaeslacpkiralssagllaetfsrirrgdsvmsl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dahB (B:)
smsshdglmvftgnanpalaqevvkilgiplgkamvsrfsdgeiqveiqenvrgkdvfvl
qstcaptndnlmelmimvdalkrasagritaaipyfgyarqdrrprsarvaisakvvanm
leiagveriitmdlhadqiqgffdipvdniyatpillgdlrkqnypdllvvspdvggvvr
aralakqlncdlaiidkrrpkanvaevmniigevegrtcvimddmvdtagtlckaaqvlk
ergakqvfayathpvlsggaadriaasaldelvvtdtiplsaeslacpkiralssaglla
etfsrirrgdsvmslfaes

    Sequence, based on observed residues (ATOM records): (download) 
    >3dahB (B:)
dglmvftgnanpalaqevvkilgiplgkamvsrfsdgeiqveiqenvrgkdvfvlqstca
ptndnlmelmimvdalkrasagritaaipyfgyarqdrrprsarvaisakvvanmleiag
veriitmdlhadqiqgffdipvdniyatpillgdlrkqnypdllvvspdvggvvrarala
kqlncdlaigevegrtcvimddmvdtagtlckaaqvlkergakqvfayathpvlsggaad
riaasaldelvvtdtiplsaeslacpkiralssagllaetfsrirrgdsvmslf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dahC (C:)
smsshdglmvftgnanpalaqevvkilgiplgkamvsrfsdgeiqveiqenvrgkdvfvl
qstcaptndnlmelmimvdalkrasagritaaipyfgyarqdrrprsarvaisakvvanm
leiagveriitmdlhadqiqgffdipvdniyatpillgdlrkqnypdllvvspdvggvvr
aralakqlncdlaiidkrrpkanvaevmniigevegrtcvimddmvdtagtlckaaqvlk
ergakqvfayathpvlsggaadriaasaldelvvtdtiplsaeslacpkiralssaglla
etfsrirrgdsvmslfaes

    Sequence, based on observed residues (ATOM records): (download) 
    >3dahC (C:)
glmvftgnanpalaqevvkilgiplgkamvsrfsdgeiqveiqenvrgkdvfvlqstcap
tndnlmelmimvdalkrasagritaaipyfgyarqdrrprsarvaisakvvanmleiagv
eriitmdlhadqiqgffdipvdniyatpillgdlrkqnypdllvvspdvggvvraralak
qlncdlaiidkrrvmniigevegrtcvimddmvdtagtlckaaqvlkergakqvfayath
pvlsggaadriaasaldelvvtdtiplsaeslacpkiralssagllaetfsrirrgdsvm