PDB entry 3d9s

View 3d9s on RCSB PDB site
Description: Human Aquaporin 5 (AQP5) - High Resolution X-ray Structure
Class: Membrane Protein
Keywords: Aquaporin, AQP, Aquaglyceroporin, membrane protein, water transport, X-ray diffraction, lipid, Phosphatidylserine, PSF, NPA, ar/R, Water channel, Glycoprotein, Membrane, Transmembrane, Transport
Deposited on 2008-05-27, released 2008-08-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.162
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Aquaporin-5
    Species: Homo sapiens [TaxId:9606]
    Gene: AQP5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P55064 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d3d9sa1, d3d9sa2
  • Chain 'B':
    Compound: Aquaporin-5
    Species: Homo sapiens [TaxId:9606]
    Gene: AQP5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P55064 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d3d9sb1, d3d9sb2
  • Chain 'C':
    Compound: Aquaporin-5
    Species: Homo sapiens [TaxId:9606]
    Gene: AQP5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d9sc_
  • Chain 'D':
    Compound: Aquaporin-5
    Species: Homo sapiens [TaxId:9606]
    Gene: AQP5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P55064 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d3d9sd1, d3d9sd2
  • Heterogens: PS6, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d9sA (A:)
mskkevcsvaflkavfaeflatlifvffglgsalkwpsalptilqialafglaigtlaqa
lgpvsgghinpaitlallvgnqisllraffyvaaqlvgaiagagilygvaplnargnlav
nalnnnttqgqamvveliltfqlalcifastdsrrtspvgspalsiglsvtlghlvgiyf
tgcsmnparsfgpavvmnrfspahwvfwvgpivgavlaailyfyllfpnslslservaii
kgtyepdedweeqreerkktmelttr

    Sequence, based on observed residues (ATOM records): (download) 
    >3d9sA (A:)
skkevcsvaflkavfaeflatlifvffglgsalkwpsalptilqialafglaigtlaqal
gpvsgghinpaitlallvgnqisllraffyvaaqlvgaiagagilygvaplnargnlavn
alnnnttqgqamvveliltfqlalcifastdsrrtspvgspalsiglsvtlghlvgiyft
gcsmnparsfgpavvmnrfspahwvfwvgpivgavlaailyfyllfpnslslservaiik
gtyep

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d9sB (B:)
mskkevcsvaflkavfaeflatlifvffglgsalkwpsalptilqialafglaigtlaqa
lgpvsgghinpaitlallvgnqisllraffyvaaqlvgaiagagilygvaplnargnlav
nalnnnttqgqamvveliltfqlalcifastdsrrtspvgspalsiglsvtlghlvgiyf
tgcsmnparsfgpavvmnrfspahwvfwvgpivgavlaailyfyllfpnslslservaii
kgtyepdedweeqreerkktmelttr

    Sequence, based on observed residues (ATOM records): (download) 
    >3d9sB (B:)
skkevcsvaflkavfaeflatlifvffglgsalkwpsalptilqialafglaigtlaqal
gpvsgghinpaitlallvgnqisllraffyvaaqlvgaiagagilygvaplnargnlavn
alnnnttqgqamvveliltfqlalcifastdsrrtspvgspalsiglsvtlghlvgiyft
gcsmnparsfgpavvmnrfspahwvfwvgpivgavlaailyfyllfpnslslservaiik
gtyep

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3d9sC (C:)
mskkevcsvaflkavfaeflatlifvffglgsalkwpsalptilqialafglaigtlaqa
lgpvsgghinpaitlallvgnqisllraffyvaaqlvgaiagagilygvaplnargnlav
nalnnnttqgqamvveliltfqlalcifastdsrrtspvgspalsiglsvtlghlvgiyf
tgcsmnparsfgpavvmnrfspahwvfwvgpivgavlaailyfyllfpnslslservaii
kgtyepdedweeqreerkktmelttr

    Sequence, based on observed residues (ATOM records): (download) 
    >3d9sC (C:)
kevcsvaflkavfaeflatlifvffglgsalkwpsalptilqialafglaigtlaqalgp
vsgghinpaitlallvgnqisllraffyvaaqlvgaiagagilygvaplnargnlavnal
nnnttqgqamvveliltfqlalcifastdsrrtspvgspalsiglsvtlghlvgiyftgc
smnparsfgpavvmnrfspahwvfwvgpivgavlaailyfyllfpnslslservaiikgt
yep

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3d9sD (D:)
mskkevcsvaflkavfaeflatlifvffglgsalkwpsalptilqialafglaigtlaqa
lgpvsgghinpaitlallvgnqisllraffyvaaqlvgaiagagilygvaplnargnlav
nalnnnttqgqamvveliltfqlalcifastdsrrtspvgspalsiglsvtlghlvgiyf
tgcsmnparsfgpavvmnrfspahwvfwvgpivgavlaailyfyllfpnslslservaii
kgtyepdedweeqreerkktmelttr

    Sequence, based on observed residues (ATOM records): (download) 
    >3d9sD (D:)
skkevcsvaflkavfaeflatlifvffglgsalkwpsalptilqialafglaigtlaqal
gpvsgghinpaitlallvgnqisllraffyvaaqlvgaiagagilygvaplnargnlavn
alnnnttqgqamvveliltfqlalcifastdsrrtspvgspalsiglsvtlghlvgiyft
gcsmnparsfgpavvmnrfspahwvfwvgpivgavlaailyfyllfpnslslservaiik
gtyep