PDB entry 3d9p

View 3d9p on RCSB PDB site
Description: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
Deposited on 2008-05-27, released 2008-06-10
The last revision was dated 2021-10-20, with a file datestamp of 2021-10-15.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-binding protein 16
    Species: Homo sapiens [TaxId:9606]
    Gene: RBM16, KIAA1116
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UPN6 (0-135)
      • engineered mutation (111)
      • expression tag (136-144)
  • Chain 'B':
    Compound: RNA-binding protein 16
    Species: Homo sapiens [TaxId:9606]
    Gene: RBM16, KIAA1116
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UPN6 (0-135)
      • engineered mutation (111)
      • expression tag (136-144)
  • Chain 'Y':
    Compound: CTD-peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D9P (0-13)
  • Chain 'Z':
    Compound: CTD-peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D9P (0-13)
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3d9pA (A:)
meavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivtvlnlwqkn
nvfkseiiqplldmaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >3d9pA (A:)
eavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykvp
glyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivtvlnlwqknn
vfkseiiqplldmaaale

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3d9pB (B:)
meavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivtvlnlwqkn
nvfkseiiqplldmaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >3d9pB (B:)
meavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivtvlnlwqkn
nvfkseiiqplldmaaalehh

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >3d9pY (Y:)
ysptspsysptsps

    Sequence, based on observed residues (ATOM records):
    >3d9pY (Y:)
ysp

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >3d9pZ (Z:)
ysptspsysptsps

    Sequence, based on observed residues (ATOM records):
    >3d9pZ (Z:)
psysptsp