PDB entry 3d9o
View 3d9o on RCSB PDB site
Description: Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II
Class: transcription
Keywords: SCAF8, RNA POLYMERASE II CTD INTERACTING DOMAIN, ARM REPEATS, PHOSPHO-CTD, Phosphoprotein, RNA-binding, Transcription
Deposited on
2008-05-27, released
2008-06-10
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-25, with a file datestamp of
2017-10-20.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: RNA-binding protein 16
Species: Homo sapiens [TaxId:9606]
Gene: RBM16, KIAA1116
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UPN6 (Start-135)
- engineered (14)
- engineered (16)
- expression tag (136-137)
Domains in SCOPe 2.08: d3d9oa1, d3d9oa2 - Chain 'B':
Compound: RNA-binding protein 16
Species: Homo sapiens [TaxId:9606]
Gene: RBM16, KIAA1116
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UPN6 (0-135)
- engineered (14)
- engineered (16)
- expression tag (136-139)
Domains in SCOPe 2.08: d3d9ob1, d3d9ob2 - Chain 'Z':
Compound: CTD-peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3d9oz_ - Heterogens: NH4, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3d9oA (A:)
meavktfnselyslmdmkppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqkn
nvfkseiiqplldmaaalehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3d9oA (A:)
eavktfnselyslmdmkppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykvp
glyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqknn
vfkseiiqplldmaaal
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3d9oB (B:)
meavktfnselyslmdmkppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqkn
nvfkseiiqplldmaaalehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3d9oB (B:)
meavktfnselyslmdmkppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqkn
nvfkseiiqplldmaaaleh
- Chain 'Z':
Sequence, based on SEQRES records: (download)
>3d9oZ (Z:)
ysptspsysptsps
Sequence, based on observed residues (ATOM records): (download)
>3d9oZ (Z:)
psysptsps