PDB entry 3d9m

View 3d9m on RCSB PDB site
Description: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
Deposited on 2008-05-27, released 2008-06-10
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-binding protein 16
    Species: Homo sapiens [TaxId:9606]
    Gene: RBM16, KIAA1116
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UPN6 (Start-135)
      • expression tag (136-138)
  • Chain 'B':
    Compound: RNA-binding protein 16
    Species: Homo sapiens [TaxId:9606]
    Gene: RBM16, KIAA1116
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UPN6 (0-135)
      • expression tag (136-139)
  • Chain 'Y':
    Compound: CTD-peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D9M
  • Chain 'Z':
    Compound: CTD-peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D9M (Start-13)
  • Heterogens: NH4, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3d9mA (A:)
meavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqkn
nvfkseiiqplldmaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >3d9mA (A:)
eavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykvp
glyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqknn
vfkseiiqplldmaaale

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3d9mB (B:)
meavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqkn
nvfkseiiqplldmaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >3d9mB (B:)
meavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqkn
nvfkseiiqplldmaaaleh

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >3d9mY (Y:)
ysptspsysptsps

    Sequence, based on observed residues (ATOM records):
    >3d9mY (Y:)
ysp

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >3d9mZ (Z:)
ysptspsysptsps

    Sequence, based on observed residues (ATOM records):
    >3d9mZ (Z:)
psysptsps