PDB entry 3d9l

View 3d9l on RCSB PDB site
Description: snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii
Deposited on 2008-05-27, released 2008-06-10
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-binding protein 16
    Species: Homo sapiens [TaxId:9606]
    Gene: RBM16, KIAA1116
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UPN6 (Start-135)
      • expression tag (136-140)
  • Chain 'B':
    Compound: RNA-binding protein 16
    Species: Homo sapiens [TaxId:9606]
    Gene: RBM16, KIAA1116
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UPN6 (0-135)
      • expression tag (136-138)
  • Chain 'Y':
    Compound: CTD-peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D9L (Start-7)
  • Chain 'Z':
    Compound: CTD-peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D9L
  • Heterogens: ACT, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3d9lA (A:)
meavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqkn
nvfkseiiqplldmaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >3d9lA (A:)
eavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykvp
glyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqknn
vfkseiiqplldmaaalehh

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3d9lB (B:)
meavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqkn
nvfkseiiqplldmaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >3d9lB (B:)
meavktfnselyslndykppiskakmtqitkaaikaikfykhvvqsvekfiqkckpeykv
pglyvidsivrqsrhqfgqekdvfaprfsnniistfqnlyrcpgddkskivrvlnlwqkn
nvfkseiiqplldmaaale

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >3d9lY (Y:)
xysptspsysptsps

    Sequence, based on observed residues (ATOM records):
    >3d9lY (Y:)
xysptspsysp

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >3d9lZ (Z:)
xysptspsysptsps

    Sequence, based on observed residues (ATOM records):
    >3d9lZ (Z:)
psysptsp