PDB entry 3d8u

View 3d8u on RCSB PDB site
Description: The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633
Class: transcription regulator
Keywords: APC91343.1, PurR, transcriptional regulator, Vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, DNA-binding, Transcription, Transcription regulation, transcription regulator
Deposited on 2008-05-23, released 2008-07-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.88 Å
R-factor: 0.217
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: PurR transcriptional regulator
    Species: Vibrio parahaemolyticus [TaxId:670]
    Gene: VPA0232
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d8ua_
  • Chain 'B':
    Compound: PurR transcriptional regulator
    Species: Vibrio parahaemolyticus [TaxId:670]
    Gene: VPA0232
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d8ub_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d8uA (A:)
snaysialiipslfekacahflpsfqqalnkagyqlllgysdysieqeekllstflesrp
agvvlfgsehsqrthqlleasntpvleiaelsskasylnigvdhfevgkactrhlieqgf
knvgfigargnhstlqrqlhgwqsamienyltpdhflttheapssqlgaeglaklllrds
slnalvcsheeiaigalfechrrvlkvptdiaiiclegssmgehaypsltsaefdyermg
tkaaekllhaikgepeerptsmgfklkrrastain

    Sequence, based on observed residues (ATOM records): (download) 
    >3d8uA (A:)
ysialiipslfekacahflpsfqqalnkagyqlllgysdysieqeekllstflesrpagv
vlfgsehsqrthqlleasntpvleiaelsskasylnigvdhfevgkactrhlieqgfknv
gfigargnhstlqrqlhgwqsamienyltpdhflttheapssqlgaeglaklllrdssln
alvcsheeiaigalfechrrvlkvptdiaiiclegssmgehaypsltsaefdyermgtka
aekllhaikgesmgfklkrrasta

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d8uB (B:)
snaysialiipslfekacahflpsfqqalnkagyqlllgysdysieqeekllstflesrp
agvvlfgsehsqrthqlleasntpvleiaelsskasylnigvdhfevgkactrhlieqgf
knvgfigargnhstlqrqlhgwqsamienyltpdhflttheapssqlgaeglaklllrds
slnalvcsheeiaigalfechrrvlkvptdiaiiclegssmgehaypsltsaefdyermg
tkaaekllhaikgepeerptsmgfklkrrastain

    Sequence, based on observed residues (ATOM records): (download) 
    >3d8uB (B:)
ysialiipslfekacahflpsfqqalnkagyqlllgysdysieqeekllstflesrpagv
vlfgsehsqrthqlleasntpvleiaelsskasylnigvdhfevgkactrhlieqgfknv
gfigargnhstlqrqlhgwqsamienyltpdhflttheapssqlgaeglaklllrdssln
alvcsheeiaigalfechrrvlkvptdiaiiclegssmgehaypsltsaefdyermgtka
aekllhaikepeeptsmgfklkrrastain