PDB entry 3d81
View 3d81 on RCSB PDB site
Description: Sir2-S-alkylamidate complex crystal structure
Class: hydrolase
Keywords: Rossmann fold, NAD dependent deacetylase, Cytoplasm, Hydrolase, Metal-binding, NAD, Zinc
Deposited on
2008-05-22, released
2008-09-30
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.224
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: NAD-dependent deacetylase
Species: Thermotoga maritima [TaxId:2336]
Gene: npdA, TM_0490
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3d81a_ - Chain 'C':
Compound: S-alkylamidate intermediate
Database cross-references and differences (RAF-indexed):
- Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3d81A (A:)
mkmkefldllnesrltvtltgagistpsgipdfrgpngiykkysqnvfdidffyshpeef
yrfakegifpmlqakpnlahvllakleekglieavitqnidrlhqragskkvielhgnve
eyycvrcekkytvedvikklessdvplcddcnslirpnivffgenlpqdalreaiglssr
aslmivlgsslvvypaaelplitvrsggklvivnlgetpfddiatlkynmdvvefarrvm
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Sequence, based on observed residues (ATOM records): (download)
>3d81A (A:)
mkmkefldllnesrltvtltgagistpsgipdfqnvfdidffyshpeefyrfakegifpm
lqakpnlahvllakleekglieavitqnidrlhqragskkvielhgnveeyycvrcekky
tvedvikklessdvplcddcnslirpnivffgenlpqdalreaiglssraslmivlgssl
vvypaaelplitvrsggklvivnlgetpfddiatlkynmdvvefarrvmeeggis
- Chain 'C':
No sequence available.