PDB entry 3d6y
View 3d6y on RCSB PDB site
Description: Crystal structure of R275E mutant of BMRR bound to DNA and berberine
Class: transcription regulator/DNA
Keywords: MULTIDRUG RESISTANCE, TRANSCRIPTION REGULATION, PROTEIN-DNA COMPLEX, Activator, DNA-binding, TRANSCRIPTION REGULATOR-DNA COMPLEX
Deposited on
2008-05-20, released
2008-08-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.227
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Multidrug-efflux transporter 1 regulator
Species: Bacillus subtilis
Gene: bmrR, bmr1R
Database cross-references and differences (RAF-indexed):
- Uniprot P39075 (Start-277)
- engineered (274)
- engineered (276-277)
Domains in SCOPe 2.08: d3d6ya1, d3d6ya2 - Chain 'B':
Compound: BMR promoter DNA
- Heterogens: BER, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3d6yA (A:)
mkesyysigevsklanvsikalryydkidlfkpayvdpdtsyryytdsqlihldlikslk
yigtpleemkkaqdlemeelfafyteqerqirekldflsaleqtislvkkrmkrqmeypa
lgevfvldeeeiriiqteaegigpenvlnasysklkkfiesadgftnnsygatfsfqpyt
sidemtyrhiftpvltnkqissitpdmeittipkgryaciaynfspehyflnlqklikyi
adrqltvvsdvyeliipihyspkkqeeyrvemkieildhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3d6yA (A:)
kesyysigevsklanvsikalryydkidlfkpayvdpdtsyryytdsqlihldlikslky
igtpleemkkaqdlemeelfafyteqerqirekldflsaleqtislvkkrmkrqmeypal
gevfvldeeeiriiqteaegigpenvlnasysklkkfiesadgftnnsygatfsfqpyts
idemtyrhiftpvltnkqissitpdmeittipkgryaciaynfspehyflnlqklikyia
drqltvvsdvyeliipihyspkkqeeyrvemkieild
- Chain 'B':
No sequence available.