PDB entry 3d6v

View 3d6v on RCSB PDB site
Description: Crystal structure of 4-(trifluoromethyldiazirinyl)phenylalanyl-tRNA synthetase
Class: ligase
Keywords: photocrosslinking unnatural amino acid, Aminoacyl-tRNA synthetase, ATP-binding, Cytoplasm, Ligase, Nucleotide-binding, Protein biosynthesis
Deposited on 2008-05-20, released 2008-05-27
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.197
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tyrosyl-tRNA synthetase
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: tyrS, MJ0389
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57834 (Start-305)
      • engineered (31)
      • engineered (69)
      • engineered (106)
      • engineered (108)
      • engineered (157-158)
      • engineered (161)
      • expression tag (306-308)
    Domains in SCOPe 2.05: d3d6va_
  • Heterogens: TFQ, BME, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d6vA (A:)
mdefemikrntseiiseeelrevlkkdeksaiigfepsgkihlghylqikkmidlqnagf
diiilladlfaylnqkgeldeirkigdynkkvfeamglkakyvygssfmldkdytlnvyr
lalkttlkrarrsmeliaredenpkvaeviypimqvnplhyegvdvavggmeqrkihmla
rellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnp
imeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikile
pirkrllehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3d6vA (A:)
defemikrntseiiseeelrevlkkdeksaiigfepsgkihlghylqikkmidlqnagfd
iiilladlfaylnqkgeldeirkigdynkkvfeamglkakyvygssfmldkdytlnvyrl
alkttlkrarrsmeliaredenpkvaeviypimqvnplhyegvdvavggmeqrkihmlar
ellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnpi
meiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikilep
irkrlleh