PDB entry 3d63

View 3d63 on RCSB PDB site
Description: Crystal structure of inorganic pyrophosphatase from Burkholderia pseudomallei
Class: hydrolase
Keywords: structural genomics, SSGCID, pyrophosphatase, Hydrolase, Seattle Structural Genomics Center for Infectious Disease
Deposited on 2008-05-18, released 2008-07-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-10-30, with a file datestamp of 2013-10-25.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.234
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: inorganic pyrophosphatase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: ppa, BURPS1710b_1237
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d63a_
  • Chain 'B':
    Compound: inorganic pyrophosphatase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: ppa, BURPS1710b_1237
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d63b_
  • Chain 'C':
    Compound: inorganic pyrophosphatase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: ppa, BURPS1710b_1237
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3JUV5 (Start-195)
      • expression tag (1-6)
    Domains in SCOPe 2.08: d3d63c1, d3d63c2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d63A (A:)
mahhhhhhmgtleaqtqgpgsmsfsnvpagkdlpqdfnviieipaqsepvkyeadkalgl
lvvdrfigtgmrypvnygfipqtlsgdgdpvdvlvitpfpllagsvvraralgmlkmtde
sgvdaklvavphdkvcpmtanlksiddvpaylkdqikhffeqykalekgkwvkvegwdgi
daahkeitdgvanfkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3d63A (A:)
fsnvpagkdlpqdfnviieipaqsepvkyeadkalgllvvdrfigtgmrypvnygfipqt
lsgdgdpvdvlvitpfpllagsvvraralgmlkmtdesgvdaklvavphdkvcpmtanlk
siddvpaylkdqikhffeqykalekgkwvkvegwdgidaahkeitdgvanfkk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d63B (B:)
mahhhhhhmgtleaqtqgpgsmsfsnvpagkdlpqdfnviieipaqsepvkyeadkalgl
lvvdrfigtgmrypvnygfipqtlsgdgdpvdvlvitpfpllagsvvraralgmlkmtde
sgvdaklvavphdkvcpmtanlksiddvpaylkdqikhffeqykalekgkwvkvegwdgi
daahkeitdgvanfkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3d63B (B:)
fsnvpagkdlpqdfnviieipaqsepvkyeadkalgllvvdrfigtgmrypvnygfipqt
lsgdgdpvdvlvitpfpllagsvvraralgmlkmtdesgvdaklvavphdkvcpmtanlk
siddvpaylkdqikhffeqykalekgkwvkvegwdgidaahkeitdgvanfkk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3d63C (C:)
mahhhhhhmgtleaqtqgpgsmsfsnvpagkdlpqdfnviieipaqsepvkyeadkalgl
lvvdrfigtgmrypvnygfipqtlsgdgdpvdvlvitpfpllagsvvraralgmlkmtde
sgvdaklvavphdkvcpmtanlksiddvpaylkdqikhffeqykalekgkwvkvegwdgi
daahkeitdgvanfkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3d63C (C:)
ahhhhhsnvpagkdlpqdfnviieipaqsepvkyeadkalgllvvdrfigtgmrypvnyg
fipqtlsgdgdpvdvlvitpfpllagsvvraralgmlkmtdesgvdaklvavphdkvcpm
tanlksiddvpaylkdqikhffeqykalekgkwvkvegwdgidaahkeitdgvanfkk