PDB entry 3d5o
View 3d5o on RCSB PDB site
Description: Structural recognition and functional activation of FcrR by innate pentraxins
Class: immune system
Keywords: complex structure, SAP, Fc RIIa, Fc receptor activation, pentraxins, Amyloid, Glycoprotein, Lectin, Metal-binding, Secreted, Cell membrane, IgG-binding protein, Immunoglobulin domain, Membrane, Phosphoprotein, Receptor, Transmembrane, IMMUNE SYSTEM
Deposited on
2008-05-16, released
2008-11-11
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: serum amyloid p-component
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3d5oa_ - Chain 'B':
Compound: serum amyloid p-component
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3d5ob_ - Chain 'C':
Compound: serum amyloid p-component
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3d5oc_ - Chain 'D':
Compound: serum amyloid p-component
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3d5od_ - Chain 'E':
Compound: serum amyloid p-component
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3d5oe_ - Chain 'F':
Compound: Low affinity immunoglobulin gamma Fc region receptor II-a
Species: Homo sapiens [TaxId:9606]
Gene: FCGR2A, CD32, FCG2, FCGR2A1, IGFR2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3d5of1, d3d5of2 - Heterogens: SO4, NAG, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3d5oA (A:)
htdlsgkvfvfpresvtdhvnlitplekplqnftlcfraysdlsrayslfsyntqgrdne
llvykervgeyslyigrhkvtskviekfpapvhicvswesssgiaefwingtplvkkglr
qgyfveaqpkivlgqeqdsyggkfdrsqsfvgeigdlymwdsvlppenilsayqgtplpa
nildwqalnyeirgyviikplvwv
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3d5oB (B:)
htdlsgkvfvfpresvtdhvnlitplekplqnftlcfraysdlsrayslfsyntqgrdne
llvykervgeyslyigrhkvtskviekfpapvhicvswesssgiaefwingtplvkkglr
qgyfveaqpkivlgqeqdsyggkfdrsqsfvgeigdlymwdsvlppenilsayqgtplpa
nildwqalnyeirgyviikplvwv
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3d5oC (C:)
htdlsgkvfvfpresvtdhvnlitplekplqnftlcfraysdlsrayslfsyntqgrdne
llvykervgeyslyigrhkvtskviekfpapvhicvswesssgiaefwingtplvkkglr
qgyfveaqpkivlgqeqdsyggkfdrsqsfvgeigdlymwdsvlppenilsayqgtplpa
nildwqalnyeirgyviikplvwv
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3d5oD (D:)
htdlsgkvfvfpresvtdhvnlitplekplqnftlcfraysdlsrayslfsyntqgrdne
llvykervgeyslyigrhkvtskviekfpapvhicvswesssgiaefwingtplvkkglr
qgyfveaqpkivlgqeqdsyggkfdrsqsfvgeigdlymwdsvlppenilsayqgtplpa
nildwqalnyeirgyviikplvwv
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3d5oE (E:)
htdlsgkvfvfpresvtdhvnlitplekplqnftlcfraysdlsrayslfsyntqgrdne
llvykervgeyslyigrhkvtskviekfpapvhicvswesssgiaefwingtplvkkglr
qgyfveaqpkivlgqeqdsyggkfdrsqsfvgeigdlymwdsvlppenilsayqgtplpa
nildwqalnyeirgyviikplvwv
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3d5oF (F:)
appkavlkleppwinvlqedsvtltcqgarspesdsiqwfhngnlipthtqpsyrfkann
ndsgeytcqtgqtslsdpvhltvlsewlvlqtphlefqegetimlrchswkdkplvkvtf
fqngksqkfsrldptfsipqanhshsgdyhctgnigytlfsskpvtitvqvhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3d5oF (F:)
appkavlkleppwinvlqedsvtltcqgarspesdsiqwfhngnlipthtqpsyrfkann
ndsgeytcqtgqtslsdpvhltvlsewlvlqtphlefqegetimlrchswkdkplvkvtf
fqngksqkfsrldptfsipqanhshsgdyhctgnigytlfsskpvtitvqv