PDB entry 3d5k

View 3d5k on RCSB PDB site
Description: Crystal structure of the OprM channel in a non-symmetrical space group
Class: membrane protein
Keywords: membrane protein, channel, beta-alpha-barrel, Antibiotic resistance, Lipoprotein, Membrane, Outer membrane, Palmitate, Transmembrane, Transport
Deposited on 2008-05-16, released 2009-06-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-04-18, with a file datestamp of 2012-04-13.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.24
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer membrane protein oprM
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: oprM, oprK, PA0427
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d5ka_
  • Chain 'B':
    Compound: Outer membrane protein oprM
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: oprM, oprK, PA0427
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d5kb_
  • Chain 'C':
    Compound: Outer membrane protein oprM
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: oprM, oprK, PA0427
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d5kc_
  • Heterogens: NA, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d5kA (A:)
cslipdyqrpeapvaaaypqgqaygqntgaaavpaadigwreffrdpqlqqligvalenn
rdlrvaalnveafraqyriqradlfprigvdgsgtrqrlpgdlsttgspaissqygvtlg
ttaweldlfgrlrslrdqaleqylateqaqrsaqttlvasvatayltlkadqaqlqltkd
tlgtyqksfdltqrsydvgvasaldlrqaqtavegaratlaqytrlvaqdqnalvlllgs
gipanlpqglgldqtlltevpaglpsdllqrrpdileaehqlmaanasigaaraaffpsi
sltanagtmsrqlsglfdagsgswlfqpsinlpiftagslrasldyakiqkdinvaqyek
aiqtafqevadglaargtfteqlqaqrdlvkasdeyyqladkryrtgvdnyltlldaqrs
lftaqqqlitdrlnqltsevnlykalgggwnqqtvtqqqtakkedpqahhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3d5kA (A:)
cslipdyqrpeapvaaaypqgqaygqntgaaavpaadigwreffrdpqlqqligvalenn
rdlrvaalnveafraqyriqradlfprigvdgsgtrqrlpgdlsttgspaissqygvtlg
ttaweldlfgrlrslrdqaleqylateqaqrsaqttlvasvatayltlkadqaqlqltkd
tlgtyqksfdltqrsydvgvasaldlrqaqtavegaratlaqytrlvaqdqnalvlllgs
gipanlpqglgldqtlltevpaglpsdllqrrpdileaehqlmaanasigaaraaffpsi
sltanagtmsrqlsglfdagsgswlfqpsinlpiftagslrasldyakiqkdinvaqyek
aiqtafqevadglaargtfteqlqaqrdlvkasdeyyqladkryrtgvdnyltlldaqrs
lftaqqqlitdrlnqltsevnlykalgggwnqqtv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d5kB (B:)
cslipdyqrpeapvaaaypqgqaygqntgaaavpaadigwreffrdpqlqqligvalenn
rdlrvaalnveafraqyriqradlfprigvdgsgtrqrlpgdlsttgspaissqygvtlg
ttaweldlfgrlrslrdqaleqylateqaqrsaqttlvasvatayltlkadqaqlqltkd
tlgtyqksfdltqrsydvgvasaldlrqaqtavegaratlaqytrlvaqdqnalvlllgs
gipanlpqglgldqtlltevpaglpsdllqrrpdileaehqlmaanasigaaraaffpsi
sltanagtmsrqlsglfdagsgswlfqpsinlpiftagslrasldyakiqkdinvaqyek
aiqtafqevadglaargtfteqlqaqrdlvkasdeyyqladkryrtgvdnyltlldaqrs
lftaqqqlitdrlnqltsevnlykalgggwnqqtvtqqqtakkedpqahhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3d5kB (B:)
cslipdyqrpeapvaaaypqgqaygqntgaaavpaadigwreffrdpqlqqligvalenn
rdlrvaalnveafraqyriqradlfprigvdgsgtrqrlpgdlsttgspaissqygvtlg
ttaweldlfgrlrslrdqaleqylateqaqrsaqttlvasvatayltlkadqaqlqltkd
tlgtyqksfdltqrsydvgvasaldlrqaqtavegaratlaqytrlvaqdqnalvlllgs
gipanlpqglgldqtlltevpaglpsdllqrrpdileaehqlmaanasigaaraaffpsi
sltanagtmsrqlsglfdagsgswlfqpsinlpiftagslrasldyakiqkdinvaqyek
aiqtafqevadglaargtfteqlqaqrdlvkasdeyyqladkryrtgvdnyltlldaqrs
lftaqqqlitdrlnqltsevnlykalgggwnqqtv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3d5kC (C:)
cslipdyqrpeapvaaaypqgqaygqntgaaavpaadigwreffrdpqlqqligvalenn
rdlrvaalnveafraqyriqradlfprigvdgsgtrqrlpgdlsttgspaissqygvtlg
ttaweldlfgrlrslrdqaleqylateqaqrsaqttlvasvatayltlkadqaqlqltkd
tlgtyqksfdltqrsydvgvasaldlrqaqtavegaratlaqytrlvaqdqnalvlllgs
gipanlpqglgldqtlltevpaglpsdllqrrpdileaehqlmaanasigaaraaffpsi
sltanagtmsrqlsglfdagsgswlfqpsinlpiftagslrasldyakiqkdinvaqyek
aiqtafqevadglaargtfteqlqaqrdlvkasdeyyqladkryrtgvdnyltlldaqrs
lftaqqqlitdrlnqltsevnlykalgggwnqqtvtqqqtakkedpqahhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3d5kC (C:)
cslipdyqrpeapvaaaypqgqaygqntgaaavpaadigwreffrdpqlqqligvalenn
rdlrvaalnveafraqyriqradlfprigvdgsgtrqrlpgdlsttgspaissqygvtlg
ttaweldlfgrlrslrdqaleqylateqaqrsaqttlvasvatayltlkadqaqlqltkd
tlgtyqksfdltqrsydvgvasaldlrqaqtavegaratlaqytrlvaqdqnalvlllgs
gipanlpqglgldqtlltevpaglpsdllqrrpdileaehqlmaanasigaaraaffpsi
sltanagtmsrqlsglfdagsgswlfqpsinlpiftagslrasldyakiqkdinvaqyek
aiqtafqevadglaargtfteqlqaqrdlvkasdeyyqladkryrtgvdnyltlldaqrs
lftaqqqlitdrlnqltsevnlykalgggwnqqtv