PDB entry 3d5i
View 3d5i on RCSB PDB site
Description: Crystal structure of ribonuclease Sa2 with exo-2',3'-cyclophosphorotioate
Class: Hydrolase
Keywords: ribonuclease, mononucleotide, protein-mononucleotide complex, exo-2',3'-cyclophosphorotioate, Hydrolase
Deposited on
2008-05-16, released
2009-05-26
The last revision prior to the SCOPe 2.01 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.21
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ribonuclease
Species: Streptomyces aureofaciens [TaxId:1894]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d3d5ia_ - Chain 'B':
Compound: Ribonuclease
Species: Streptomyces aureofaciens [TaxId:1894]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d3d5ib_ - Chain 'C':
Compound: Ribonuclease
Species: Streptomyces aureofaciens [TaxId:1894]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d3d5ic_ - Heterogens: SO4, SGP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3d5iA (A:)
adpaladvcrtklpsqaqdtlaliakngpypynrdgvvfenresrlpkkgngyyheftvv
tpgsndrgtrrvvtggygeqywspdhyatfqeidprc
Sequence, based on observed residues (ATOM records): (download)
>3d5iA (A:)
aladvcrtklpsqaqdtlaliakngpypynrdgvvfenresrlpkkgngyyheftvvtpg
drgtrrvvtggygeqywspdhyatfqeidprc
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3d5iB (B:)
adpaladvcrtklpsqaqdtlaliakngpypynrdgvvfenresrlpkkgngyyheftvv
tpgsndrgtrrvvtggygeqywspdhyatfqeidprc
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3d5iC (C:)
adpaladvcrtklpsqaqdtlaliakngpypynrdgvvfenresrlpkkgngyyheftvv
tpgsndrgtrrvvtggygeqywspdhyatfqeidprc
Sequence, based on observed residues (ATOM records): (download)
>3d5iC (C:)
ladvcrtklpsqaqdtlaliakngpypynrdgvvfenresrlpkkgngyyheftvvtpdr
gtrrvvtggygeqywspdhyatfqeidprc