PDB entry 3d5f

View 3d5f on RCSB PDB site
Description: Crystal Structure of PPAR-delta complex
Class: transcription
Keywords: Nuclear Receptor, Activator, Alternative splicing, DNA-binding, Metal-binding, Nucleus, Transcription, Transcription regulation, Zinc, Zinc-finger
Deposited on 2008-05-16, released 2008-06-03
The last revision prior to the SCOP 1.75 freeze date was dated 2008-06-03, with a file datestamp of 2008-05-30.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.278
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peroxisome proliferator-activated receptor delta
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03181 (0-End)
      • engineered (219)
    Domains in SCOP 1.75: d3d5fa1
  • Chain 'B':
    Compound: Peroxisome proliferator-activated receptor delta
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03181 (0-266)
      • engineered (219)
    Domains in SCOP 1.75: d3d5fb1
  • Heterogens: L41, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d5fA (A:)
lkafskhiynaylknfnmtkkkarsiltgkashtapfvihdietlwqaekglvwkqlvng
lppykeisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifaml
asivnkdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaa
iilcgdrpglmnvprveaiqdtilralefhlqanhpdaqqlfpkllqkmadlrqlvteha
qmmqrikktetetslhpllqeiykdmy

    Sequence, based on observed residues (ATOM records): (download) 
    >3d5fA (A:)
lkafskhiynaylknfnmtkkkarsiltgpfvihdietlwqaekglvwlppykeisvhvf
yrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifamlasivnkdgllva
ngsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaaiilcgdrpglmn
vprveaiqdtilralefhlqanhpdaqqlfpkllqkmadlrqlvtehaqmmqrikktete
tslhpllqeiykdm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d5fB (B:)
lkafskhiynaylknfnmtkkkarsiltgkashtapfvihdietlwqaekglvwkqlvng
lppykeisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifaml
asivnkdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaa
iilcgdrpglmnvprveaiqdtilralefhlqanhpdaqqlfpkllqkmadlrqlvteha
qmmqrikktetetslhpllqeiykdmy

    Sequence, based on observed residues (ATOM records): (download) 
    >3d5fB (B:)
lkafskhiynaylknfnmtkkkarsiltpfvihdietlwqaekglvwlppykeisvhvfy
rcqcttvetvreltefaksipsfsslflndqvtllkygvheaifamlasivnkdgllvan
gsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaaiilcgdrpglmnv
prveaiqdtilralefhlqanhpdaqqlfpkllqkmadlrqlvtehaqmmqrikktetet
slhpllqeiykdmy