PDB entry 3d4o

View 3d4o on RCSB PDB site
Description: crystal structure of dipicolinate synthase subunit a (np_243269.1) from bacillus halodurans at 2.10 a resolution
Deposited on 2008-05-14, released 2008-07-08
The last revision was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dipicolinate synthase subunit A
    Species: Bacillus halodurans [TaxId:86665]
    Gene: NP_243269.1, spoVFA, BH2403
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KA87 (1-End)
      • leader sequence (0)
  • Chain 'B':
    Compound: Dipicolinate synthase subunit A
    Species: Bacillus halodurans [TaxId:86665]
    Gene: NP_243269.1, spoVFA, BH2403
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KA87 (1-End)
      • leader sequence (0)
  • Chain 'C':
    Compound: Dipicolinate synthase subunit A
    Species: Bacillus halodurans [TaxId:86665]
    Gene: NP_243269.1, spoVFA, BH2403
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KA87 (1-End)
      • leader sequence (0)
  • Chain 'D':
    Compound: Dipicolinate synthase subunit A
    Species: Bacillus halodurans [TaxId:86665]
    Gene: NP_243269.1, spoVFA, BH2403
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KA87 (1-End)
      • leader sequence (0)
  • Heterogens: EDO, TAR, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3d4oA (A:)
gmltgkhvviiggdarqleiirklstfdakislvgfdqlddgfigvtkmridevdwntvd
aillpisgtneagkvdtifsnesivlteemiektpnhcvvysgisntylnqcmkktnrtl
vklmerddiaiynsiptaegtimmaiqhtdftihganvavlglgrvgmsvarkfaalgak
vkvgaresdllariaemgmepfhiskaaqelrdvdvcintipalvvtanvlaempshtfv
idlaskpggtdfryaekrgikallvpglpgivapktagriladvlvkllaeps

    Sequence, based on observed residues (ATOM records):
    >3d4oA (A:)
gmltgkhvviiggdarqleiirklstfdakislvgfdqldfigvtkmridevdwntvdai
llpisgtneagkvdtifsnesivlteemiektpnhcvvysgisntylnqcmkktnrtlvk
lmerddiaiynsiptaegtimmaiqhtdftihganvavlglgrvgmsvarkfaalgakvk
vgaresdllariaemgmepfhiskaaqelrdvdvcintipalvvtanvlaempshtfvid
laskpggtdfryaekrgikallvpglpgivapktagriladvlvkllaep

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3d4oB (B:)
gmltgkhvviiggdarqleiirklstfdakislvgfdqlddgfigvtkmridevdwntvd
aillpisgtneagkvdtifsnesivlteemiektpnhcvvysgisntylnqcmkktnrtl
vklmerddiaiynsiptaegtimmaiqhtdftihganvavlglgrvgmsvarkfaalgak
vkvgaresdllariaemgmepfhiskaaqelrdvdvcintipalvvtanvlaempshtfv
idlaskpggtdfryaekrgikallvpglpgivapktagriladvlvkllaeps

    Sequence, based on observed residues (ATOM records):
    >3d4oB (B:)
gmltgkhvviiggdarqleiirklstfdakislvgfdqldgfigvtkmridevdwntvda
illpisgtneagkvdtifsnesivlteemiektpnhcvvysgisntylnqcmkktnrtlv
klmerddiaiynsiptaegtimmaiqhtdftihganvavlglgrvgmsvarkfaalgakv
kvgaresdllariaemgmepfhiskaaqelrdvdvcintipalvvtanvlaempshtfvi
dlaskpggtdfryaekrgikallvpglpgivapktagriladvlvkllaep

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3d4oC (C:)
gmltgkhvviiggdarqleiirklstfdakislvgfdqlddgfigvtkmridevdwntvd
aillpisgtneagkvdtifsnesivlteemiektpnhcvvysgisntylnqcmkktnrtl
vklmerddiaiynsiptaegtimmaiqhtdftihganvavlglgrvgmsvarkfaalgak
vkvgaresdllariaemgmepfhiskaaqelrdvdvcintipalvvtanvlaempshtfv
idlaskpggtdfryaekrgikallvpglpgivapktagriladvlvkllaeps

    Sequence, based on observed residues (ATOM records):
    >3d4oC (C:)
gmltgkhvviiggdarqleiirklstfdakislvgfdqlddgfigvtkmridevdwntvd
aillpisgtneagkvdtifsnesivlteemiektpnhcvvysgisntylnqcmkktnrtl
vklmerddiaiynsiptaegtimmaiqhtdftihganvavlglgrvgmsvarkfaalgak
vkvgaresdllariaemgmepfhiskaaqelrdvdvcintipalvvtanvlaempshtfv
idlaskpggtdfryaekrgikallvpglpgivapktagriladvlvkllae

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3d4oD (D:)
gmltgkhvviiggdarqleiirklstfdakislvgfdqlddgfigvtkmridevdwntvd
aillpisgtneagkvdtifsnesivlteemiektpnhcvvysgisntylnqcmkktnrtl
vklmerddiaiynsiptaegtimmaiqhtdftihganvavlglgrvgmsvarkfaalgak
vkvgaresdllariaemgmepfhiskaaqelrdvdvcintipalvvtanvlaempshtfv
idlaskpggtdfryaekrgikallvpglpgivapktagriladvlvkllaeps

    Sequence, based on observed residues (ATOM records):
    >3d4oD (D:)
gmltgkhvviiggdarqleiirklstfdakislvgfdqldgfigvtkmridevdwntvda
illpisgtneagkvdtifsnesivlteemiektpnhcvvysgisntylnqcmkktnrtlv
klmerddiaiynsiptaegtimmaiqhtdftihganvavlglgrvgmsvarkfaalgakv
kvgaresdllariaemgmepfhiskaaqelrdvdvcintipalvvtanvlaempshtfvi
dlaskpggtdfryaekrgikallvpglpgivapktagriladvlvkllae