PDB entry 3d47

View 3d47 on RCSB PDB site
Description: crystal structure of l-rhamnonate dehydratase from salmonella typhimurium complexed with mg and d-malate
Deposited on 2008-05-14, released 2008-06-03
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative galactonate dehydratase
    Species: Salmonella typhimurium LT2 [TaxId:99287]
    Gene: yfaW, STM2291
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative galactonate dehydratase
    Species: Salmonella typhimurium LT2 [TaxId:99287]
    Gene: yfaW, STM2291
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Putative galactonate dehydratase
    Species: Salmonella typhimurium LT2 [TaxId:99287]
    Gene: yfaW, STM2291
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Putative galactonate dehydratase
    Species: Salmonella typhimurium LT2 [TaxId:99287]
    Gene: yfaW, STM2291
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Putative galactonate dehydratase
    Species: Salmonella typhimurium LT2 [TaxId:99287]
    Gene: yfaW, STM2291
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Putative galactonate dehydratase
    Species: Salmonella typhimurium LT2 [TaxId:99287]
    Gene: yfaW, STM2291
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Putative galactonate dehydratase
    Species: Salmonella typhimurium LT2 [TaxId:99287]
    Gene: yfaW, STM2291
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Putative galactonate dehydratase
    Species: Salmonella typhimurium LT2 [TaxId:99287]
    Gene: yfaW, STM2291
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, MLT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >3d47A (A:)
menimtlpkikhvrawfiggataekgagggdyhdqggnhwiddhiatpmskyrdyeqsrq
sfginvlgtliveveaenrqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqml
gatmyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdla
kemgfiggkmpthwgphdgdagirkdaamvadmrekcgpdfwlmldcwmsqdvnyatkla
hacapfnlkwieeclppqqyegyrelkrnapagmmvtsgehhgtlqsfrtlaetgidimq
pdvgwcgglttlveiaalaksrgqlvvphgssvyshhavitftntpfseflmtspdcstl
rpqfdpilldepvpvngrihksvldkpgfgvelnrdchlkrpysh

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >3d47B (B:)
menimtlpkikhvrawfiggataekgagggdyhdqggnhwiddhiatpmskyrdyeqsrq
sfginvlgtliveveaenrqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqml
gatmyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdla
kemgfiggkmpthwgphdgdagirkdaamvadmrekcgpdfwlmldcwmsqdvnyatkla
hacapfnlkwieeclppqqyegyrelkrnapagmmvtsgehhgtlqsfrtlaetgidimq
pdvgwcgglttlveiaalaksrgqlvvphgssvyshhavitftntpfseflmtspdcstl
rpqfdpilldepvpvngrihksvldkpgfgvelnrdchlkrpysh

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >3d47C (C:)
menimtlpkikhvrawfiggataekgagggdyhdqggnhwiddhiatpmskyrdyeqsrq
sfginvlgtliveveaenrqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqml
gatmyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdla
kemgfiggkmpthwgphdgdagirkdaamvadmrekcgpdfwlmldcwmsqdvnyatkla
hacapfnlkwieeclppqqyegyrelkrnapagmmvtsgehhgtlqsfrtlaetgidimq
pdvgwcgglttlveiaalaksrgqlvvphgssvyshhavitftntpfseflmtspdcstl
rpqfdpilldepvpvngrihksvldkpgfgvelnrdchlkrpysh

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >3d47D (D:)
menimtlpkikhvrawfiggataekgagggdyhdqggnhwiddhiatpmskyrdyeqsrq
sfginvlgtliveveaenrqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqml
gatmyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdla
kemgfiggkmpthwgphdgdagirkdaamvadmrekcgpdfwlmldcwmsqdvnyatkla
hacapfnlkwieeclppqqyegyrelkrnapagmmvtsgehhgtlqsfrtlaetgidimq
pdvgwcgglttlveiaalaksrgqlvvphgssvyshhavitftntpfseflmtspdcstl
rpqfdpilldepvpvngrihksvldkpgfgvelnrdchlkrpysh

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >3d47E (E:)
menimtlpkikhvrawfiggataekgagggdyhdqggnhwiddhiatpmskyrdyeqsrq
sfginvlgtliveveaenrqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqml
gatmyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdla
kemgfiggkmpthwgphdgdagirkdaamvadmrekcgpdfwlmldcwmsqdvnyatkla
hacapfnlkwieeclppqqyegyrelkrnapagmmvtsgehhgtlqsfrtlaetgidimq
pdvgwcgglttlveiaalaksrgqlvvphgssvyshhavitftntpfseflmtspdcstl
rpqfdpilldepvpvngrihksvldkpgfgvelnrdchlkrpysh

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >3d47F (F:)
menimtlpkikhvrawfiggataekgagggdyhdqggnhwiddhiatpmskyrdyeqsrq
sfginvlgtliveveaenrqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqml
gatmyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdla
kemgfiggkmpthwgphdgdagirkdaamvadmrekcgpdfwlmldcwmsqdvnyatkla
hacapfnlkwieeclppqqyegyrelkrnapagmmvtsgehhgtlqsfrtlaetgidimq
pdvgwcgglttlveiaalaksrgqlvvphgssvyshhavitftntpfseflmtspdcstl
rpqfdpilldepvpvngrihksvldkpgfgvelnrdchlkrpysh

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >3d47G (G:)
menimtlpkikhvrawfiggataekgagggdyhdqggnhwiddhiatpmskyrdyeqsrq
sfginvlgtliveveaenrqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqml
gatmyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdla
kemgfiggkmpthwgphdgdagirkdaamvadmrekcgpdfwlmldcwmsqdvnyatkla
hacapfnlkwieeclppqqyegyrelkrnapagmmvtsgehhgtlqsfrtlaetgidimq
pdvgwcgglttlveiaalaksrgqlvvphgssvyshhavitftntpfseflmtspdcstl
rpqfdpilldepvpvngrihksvldkpgfgvelnrdchlkrpysh

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >3d47H (H:)
menimtlpkikhvrawfiggataekgagggdyhdqggnhwiddhiatpmskyrdyeqsrq
sfginvlgtliveveaenrqtgfavstagemgcfivekhlnrfiegkcvsdiklihdqml
gatmyysgsgglvmntiscvdlalwdlfgkvvglpvykllggavrdeiqfyatgarpdla
kemgfiggkmpthwgphdgdagirkdaamvadmrekcgpdfwlmldcwmsqdvnyatkla
hacapfnlkwieeclppqqyegyrelkrnapagmmvtsgehhgtlqsfrtlaetgidimq
pdvgwcgglttlveiaalaksrgqlvvphgssvyshhavitftntpfseflmtspdcstl
rpqfdpilldepvpvngrihksvldkpgfgvelnrdchlkrpysh