PDB entry 3d3c

View 3d3c on RCSB PDB site
Description: Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
Class: transcription
Keywords: NusB, S10, NusE, Nut, phage lambda, lambda N antitermination, rrn antitermination, transcription regulation, RNA-binding, Transcription, Transcription termination, Ribonucleoprotein, Ribosomal protein
Deposited on 2008-05-09, released 2009-01-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-08-23, with a file datestamp of 2017-08-18.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: N utilization substance protein B
  Species: Escherichia coli [TaxId:83333]
  Gene: nusB, ssyB, b0416, JW0406
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A780 (Start-140)
    • engineered (3)
  Domains in SCOPe 2.08: d3d3ca_
• Chain 'B':
  Compound: N utilization substance protein B
  Species: Escherichia coli [TaxId:83333]
  Gene: nusB, ssyB, b0416, JW0406
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A780 (Start-140)
    • engineered (3)
  Domains in SCOPe 2.08: d3d3cb_
• Chain 'C':
  Compound: N utilization substance protein B
  Species: Escherichia coli [TaxId:83333]
  Gene: nusB, ssyB, b0416, JW0406
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A780 (Start-140)
    • engineered (3)
  Domains in SCOPe 2.08: d3d3cc_
• Chain 'J':
  Compound: 30S ribosomal protein S10
  Species: Escherichia coli [TaxId:83333]
  Gene: rpsJ, nusE, b3321, JW3283
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7R5 (5-49)
    • expression tag (2-4)
  • Uniprot P0A7R5 (51-86)
    • see remark 999 (50)
    • engineered (69)
• Chain 'K':
  Compound: 30S ribosomal protein S10
  Species: Escherichia coli [TaxId:83333]
  Gene: rpsJ, nusE, b3321, JW3283
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7R5 (5-49)
    • expression tag (0-4)
  • Uniprot P0A7R5 (51-86)
    • see remark 999 (50)
    • engineered (69)
• Chain 'L':
  Compound: 30S ribosomal protein S10
  Species: Escherichia coli [TaxId:83333]
  Gene: rpsJ, nusE, b3321, JW3283
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7R5 (5-49)
    • expression tag (0-4)
  • Uniprot P0A7R5 (51-86)
    • see remark 999 (50)
    • engineered (69)
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence, based on SEQRES records: (download)
  

  >3d3cA (A:)
  gamepaarrrarecavqalyswqlsqndiadveyqflaeqdvkdvdvlyfrellagvatn
  tayldglmkpylsrlleelgqvekavlrialyelskrsdvpykvaineaielaksfgaed
  shkfvngvldkaapvirpnkk
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3d3cA (A:)
  epaarrrarecavqalyswqlsqndiadveyqflaeqdvkdvdvlyfrellagvatntay
  ldglmkpylsrlleelgqvekavlrialyelskrsdvpykvaineaielaksfgaedshk
  fvngvldkaapvirpnkk
  

  
  
• Chain 'B':
  Sequence, based on SEQRES records: (download)
  

  >3d3cB (B:)
  gamepaarrrarecavqalyswqlsqndiadveyqflaeqdvkdvdvlyfrellagvatn
  tayldglmkpylsrlleelgqvekavlrialyelskrsdvpykvaineaielaksfgaed
  shkfvngvldkaapvirpnkk
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3d3cB (B:)
  epaarrrarecavqalyswqlsqndiadveyqflaeqdvkdvdvlyfrellagvatntay
  ldglmkpylsrlleelgqvekavlrialyelskrsdvpykvaineaielaksfgaedshk
  fvngvldkaapvirpnkk
  

  
  
• Chain 'C':
  Sequence, based on SEQRES records: (download)
  

  >3d3cC (C:)
  gamepaarrrarecavqalyswqlsqndiadveyqflaeqdvkdvdvlyfrellagvatn
  tayldglmkpylsrlleelgqvekavlrialyelskrsdvpykvaineaielaksfgaed
  shkfvngvldkaapvirpnkk
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3d3cC (C:)
  epaarrrarecavqalyswqlsqndiadveyqflaeqdvkdvdvlyfrellagvatntay
  ldglmkpylsrlleelgqvekavlrialyelskrsdvpykvaineaielaksfgaedshk
  fvngvldkaapvirpnkk
  

  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  No sequence available.