PDB entry 3d2z

View 3d2z on RCSB PDB site
Description: Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the product L-Ala-D-gamma-Glu-L-Lys
Deposited on 2008-05-09, released 2009-06-16
The last revision was dated 2011-07-27, with a file datestamp of 2011-07-22.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.205
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: n-acetylmuramoyl-l-alanine amidase amid
    Species: Escherichia coli str. K12 substr. MG1655 [TaxId:511145]
    Gene: amiD, ybjR, b0867, JW0851
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: L-Ala-D-gamma-Glu-L-Lys peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D2Z (0-2)
  • Heterogens: ZN, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3d2zA (A:)
mgagekgivekegyqldtrrqaqaayprikvlvihytaddfdsslatltdkqvsshylvp
avppryngkpriwqlvpeqelawhagisawrgatrlndtsigielenrgwqksagvkyfa
pfepaqiqaliplakdiiaryhikpenvvahadiapqrkddpgplfpwqqlaqqgigawp
daqrvnfylagraphtpvdtasllellarygydvkpdmtpreqrrvimafqmhfrptlyn
geadaetqaiaeallekygqd

    Sequence, based on observed residues (ATOM records):
    >3d2zA (A:)
kgivekegyqldtrrqaqaayprikvlvihytaddfdsslatltdkqvsshylvpavppr
yngkpriwqlvpeqelawhagisawrgatrlndtsigielenrgwqksagvkyfapfepa
qiqaliplakdiiaryhikpenvvahadiapqrkddpgplfpwqqlaqqgigawpdaqrv
nfylagraphtpvdtasllellarygydvkpdmtpreqrrvimafqmhfrptlyngeada
etqaiaeallekygqd

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >3d2zB (B:)
axk