PDB entry 3d1i

View 3d1i on RCSB PDB site
Description: structure of the thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with nitrite
Deposited on 2008-05-06, released 2009-05-12
The last revision was dated 2017-09-13, with a file datestamp of 2017-09-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Eight-heme nitrite reductase
    Species: Thioalkalivibrio nitratireducens [TaxId:186931]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Eight-heme nitrite reductase
    Species: Thioalkalivibrio nitratireducens [TaxId:186931]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HEC, CA, NO2, NA, PG4, PG6, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3d1iA (A:)
epgenlkpvdamqcfdchtqiedmhtvgkhatvncvhchdatehvetassrrmgerpvtr
mdleacatchtaqfnsfvevrheshprlekatptsrspmfdkliaghgfafehaeprsha
fmlvdhfvvdrayggrfqfknwqkvtdgmgavrgawtvltdadpessdqrrflsqtataa
npvclncktqdhildwaymgdeheaakwsrtsevvefardlnhplncfmchdphsagprv
vrdglinavvdrglgtyphdpvkseqqgmtkvtfqrgredfraiglldtadsnvmcaqch
veyncnpgyqlsdgsrvgmddrranhffwanvfdykeaaqeidffdfrhattgaalpklq
hpeaetfwgsvherngvacadchmpkvqlengkvytshsqrtprdmmgqaclnchaewte
dqalyaidyiknythgkivkseywlakmidlfpvakragvsedvlnqarelhydahlywe
wwtaensvgfhnpdqareslmtsiskskeavsllndaidaqvasr

    Sequence, based on observed residues (ATOM records):
    >3d1iA (A:)
nlkpvdamqcfdchtqiedmhtvgkhatvncvhchdatehvetassrrmgerpvtrmdle
acatchtaqfnsfvevrheshprlekatptsrspmfdkliaghgfafehaeprshafmlv
dhfvvdrayggrfqfknwqkvtdgmgavrgawtvltdadpessdqrrflsqtataanpvc
lncktqdhildwaymgdeheaakwsrtsevvefardlnhplncfmchdphsagprvvrdg
linavvdrglgtyphdpvkseqqgmtkvtfqrgredfraiglldtadsnvmcaqchveyn
cnpgyqlsdgsrvgmddrranhffwanvfdykeaaqeidffdfrhattgaalpklqhpea
etfwgsvherngvacadchmpkvqlengkvytshsqrtprdmmgqaclnchaewtedqal
yaidyiknythgkivkseywlakmidlfpvakragvsedvlnqarelhydahlywewwta
ensvgfhnpdqareslmtsiskskeavsllndaidaqva

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3d1iB (B:)
epgenlkpvdamqcfdchtqiedmhtvgkhatvncvhchdatehvetassrrmgerpvtr
mdleacatchtaqfnsfvevrheshprlekatptsrspmfdkliaghgfafehaeprsha
fmlvdhfvvdrayggrfqfknwqkvtdgmgavrgawtvltdadpessdqrrflsqtataa
npvclncktqdhildwaymgdeheaakwsrtsevvefardlnhplncfmchdphsagprv
vrdglinavvdrglgtyphdpvkseqqgmtkvtfqrgredfraiglldtadsnvmcaqch
veyncnpgyqlsdgsrvgmddrranhffwanvfdykeaaqeidffdfrhattgaalpklq
hpeaetfwgsvherngvacadchmpkvqlengkvytshsqrtprdmmgqaclnchaewte
dqalyaidyiknythgkivkseywlakmidlfpvakragvsedvlnqarelhydahlywe
wwtaensvgfhnpdqareslmtsiskskeavsllndaidaqvasr

    Sequence, based on observed residues (ATOM records):
    >3d1iB (B:)
nlkpvdamqcfdchtqiedmhtvgkhatvncvhchdatehvetassrrmgerpvtrmdle
acatchtaqfnsfvevrheshprlekatptsrspmfdkliaghgfafehaeprshafmlv
dhfvvdrayggrfqfknwqkvtdgmgavrgawtvltdadpessdqrrflsqtataanpvc
lncktqdhildwaymgdeheaakwsrtsevvefardlnhplncfmchdphsagprvvrdg
linavvdrglgtyphdpvkseqqgmtkvtfqrgredfraiglldtadsnvmcaqchveyn
cnpgyqlsdgsrvgmddrranhffwanvfdykeaaqeidffdfrhattgaalpklqhpea
etfwgsvherngvacadchmpkvqlengkvytshsqrtprdmmgqaclnchaewtedqal
yaidyiknythgkivkseywlakmidlfpvakragvsedvlnqarelhydahlywewwta
ensvgfhnpdqareslmtsiskskeavsllndaidaqva