PDB entry 3d1f

View 3d1f on RCSB PDB site
Description: Crystal structure of E. coli sliding clamp (beta) bound to a polymerase III peptide
Class: transferase, transcription
Keywords: chemical probe, DNA polymerase, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, TRANSFERASE, TRANSCRIPTION
Deposited on 2008-05-05, released 2008-07-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase III subunit beta
    Species: ESCHERICHIA COLI
    Gene: dnaN
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d1fa1, d3d1fa2, d3d1fa3
  • Chain 'B':
    Compound: DNA polymerase III subunit beta
    Species: ESCHERICHIA COLI
    Gene: dnaN
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d1fb1, d3d1fb2, d3d1fb3
  • Chain 'P':
    Compound: Nonapeptide from polymerase III C-terminal
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D1F (0-8)
  • Chain 'Q':
    Compound: Nonapeptide from polymerase III C-terminal
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D1F (0-8)
  • Heterogens: PEG, 323, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3d1fA (A:)
mkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarvalv
qphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpnld
dwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrlavc
smpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvdgr
fpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpeqe
eaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaayv
vmpmrl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3d1fB (B:)
mkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarvalv
qphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpnld
dwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrlavc
smpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvdgr
fpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpeqe
eaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaayv
vmpmrl

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.