PDB entry 3d1e

View 3d1e on RCSB PDB site
Description: Crystal structure of E. coli sliding clamp (beta) bound to a polymerase II peptide
Class: transferase, transcription
Keywords: chemical probe, DNA polymerase, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, TRANSFERASE, TRANSCRIPTION
Deposited on 2008-05-05, released 2008-07-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase III subunit beta
    Species: Escherichia coli [TaxId:562]
    Gene: dnaN
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d1ea1, d3d1ea2, d3d1ea3
  • Chain 'B':
    Compound: DNA polymerase III subunit beta
    Species: Escherichia coli [TaxId:562]
    Gene: dnaN
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3d1eb1, d3d1eb2, d3d1eb3
  • Chain 'P':
    Compound: decamer from polymerase II C-terminal
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3D1E (Start-9)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3d1eA (A:)
mkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarvalv
qphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpnld
dwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrlavc
smpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvdgr
fpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpeqe
eaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaayv
vmpmrl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3d1eB (B:)
mkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarvalv
qphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpnld
dwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrlavc
smpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvdgr
fpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpeqe
eaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaayv
vmpmrl

  • Chain 'P':
    No sequence available.