PDB entry 3d18

View 3d18 on RCSB PDB site
Description: Crystal structure of HLA-B*2709 complexed with a variant of the latent membrane protein 2 peptide (LMP2(L)) of epstein-barr virus
Class: immune system
Keywords: IMMUNE SYSTEM-COMPLEX, Glycoprotein, Host-virus interaction, Immune response, Membrane, MHC I, Transmembrane, Disease mutation, Glycation, Immunoglobulin domain, Pyrrolidone carboxylic acid, Secreted, Phosphoprotein, IMMUNE SYSTEM
Deposited on 2008-05-05, released 2009-05-05
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.74 Å
R-factor: 0.194
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: HLA class I histocompatibility antigen, B-27 alpha chain
  Species: Homo sapiens [TaxId:9606]
  Gene: HLA-B, HLAB
  Database cross-references and differences (RAF-indexed):
  • Uniprot P03989 (0-275)
    • variant (115)
• Chain 'B':
  Compound: Beta-2-microglobulin
  Species: Homo sapiens [TaxId:9606]
  Gene: B2M
  Database cross-references and differences (RAF-indexed):
  • Uniprot P61769 (1-99)
    • initiating methionine (0)
  Domains in SCOPe 2.03: d3d18b_
• Chain 'C':
  Compound: Latent membrane protein 2
  Species: synthetic, synthetic
  Database cross-references and differences (RAF-indexed):
  • PDB 3D18 (0-8)
• Heterogens: GOL, TRS, MES, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3d18B (B:)
  miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
  wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
  

  
  
• Chain 'C':
  No sequence available.