PDB entry 3d03

View 3d03 on RCSB PDB site
Description: 1.9A structure of Glycerophoshphodiesterase (GpdQ) from Enterobacter aerogenes
Class: hydrolase
Keywords: glycerophosphodiesterase, metallohydrolase, phosphatase, metal ion, Hydrolase
Deposited on 2008-04-30, released 2008-10-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-12-29, with a file datestamp of 2009-12-24.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.186
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phosphohydrolase
    Species: Enterobacter aerogenes [TaxId:548]
    Gene: GpdQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6XBH1 (0-273)
      • see remark 999 (223)
      • see remark 999 (226)
    Domains in SCOPe 2.08: d3d03a_
  • Chain 'B':
    Compound: Phosphohydrolase
    Species: Enterobacter aerogenes [TaxId:548]
    Gene: GpdQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6XBH1 (0-End)
      • see remark 999 (223)
      • see remark 999 (226)
    Domains in SCOPe 2.08: d3d03b_
  • Chain 'C':
    Compound: Phosphohydrolase
    Species: Enterobacter aerogenes [TaxId:548]
    Gene: GpdQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6XBH1 (0-End)
      • see remark 999 (223)
      • see remark 999 (226)
    Domains in SCOPe 2.08: d3d03c_
  • Chain 'D':
    Compound: Phosphohydrolase
    Species: Enterobacter aerogenes [TaxId:548]
    Gene: GpdQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6XBH1 (0-End)
      • see remark 999 (223)
      • see remark 999 (226)
    Domains in SCOPe 2.08: d3d03d_
  • Chain 'E':
    Compound: Phosphohydrolase
    Species: Enterobacter aerogenes [TaxId:548]
    Gene: GpdQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6XBH1 (0-End)
      • see remark 999 (223)
      • see remark 999 (226)
    Domains in SCOPe 2.08: d3d03e_
  • Chain 'F':
    Compound: Phosphohydrolase
    Species: Enterobacter aerogenes [TaxId:548]
    Gene: GpdQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6XBH1 (0-273)
      • see remark 999 (223)
      • see remark 999 (226)
    Domains in SCOPe 2.08: d3d03f_
  • Heterogens: CO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3d03A (A:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpteer

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d03B (B:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpteer

    Sequence, based on observed residues (ATOM records): (download) 
    >3d03B (B:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3d03C (C:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpteer

    Sequence, based on observed residues (ATOM records): (download) 
    >3d03C (C:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3d03D (D:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpteer

    Sequence, based on observed residues (ATOM records): (download) 
    >3d03D (D:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpt

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3d03E (E:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpteer

    Sequence, based on observed residues (ATOM records): (download) 
    >3d03E (E:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpt

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3d03F (F:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpteer