PDB entry 3cxd

View 3cxd on RCSB PDB site
Description: crystal structure of anti-osteopontin antibody 23c3 in complex with its epitope peptide
Deposited on 2008-04-24, released 2008-10-14
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Fab fragment of anti-osteopontin antibody 23C3, Heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3CXD (0-215)
  • Chain 'L':
    Compound: Fab fragment of anti-osteopontin antibody 23C3, Light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3CXD (0-212)
  • Chain 'P':
    Compound: a peptide from osteopontin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >3cxdH (H:)
evqlvesggglvqpkgslkiscaasgftfniyamnwvrqapgkglewvarirsqsnnytt
yyadsvkdrftisrddsqsmlylqmnnlktedtamyycvrqmgdywgqgttltvssavkt
ppsvyplapgggaisnsmvtlgclvngyfpepvtvtwnagslgsgvhtfpavlqsdlytl
sssvtvpvstwpseavtcnvahpasatsvdkaispv

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >3cxdL (L:)
yiqmtqspaslsvsvgetvtitcraseniysflawyqqkqgkspqllvyaatnladgvps
rfsgsgsgtqfslkinslqsedfgtyycqhfwgtpftfgsgtkleikrsdaaptvsifpp
saaqlssgggsvvcflnnfypkdinvkwkidgaergngvlnswtsqdsadstysmsstlt
sggdeyerhnsytceathktstspivksfnraa

  • Chain 'P':
    Sequence, based on SEQRES records:
    >3cxdP (P:)
vatwlnpdpsqk

    Sequence, based on observed residues (ATOM records):
    >3cxdP (P:)
twlnpdpsq