PDB entry 3cvn

View 3cvn on RCSB PDB site
Description: Structure of Peroxisomal Targeting Signal 1 (PTS1) binding domain of Trypanosoma brucei Peroxin 5 (TbPEX5)complexed to T. brucei Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) PTS1 peptide
Class: transport protein
Keywords: TPR motifs, TPR protein, Peroxin 5, PEX5, PTS1 binding domain, Protein-peptide complex, Receptor, TPR repeat, TRANSPORT PROTEIN
Deposited on 2008-04-18, released 2008-06-24
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.196
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peroxisome targeting signal 1 receptor
    Species: Trypanosoma brucei
    Gene: PEX5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57W55 (Start-326)
      • engineered (49-50)
    Domains in SCOPe 2.02: d3cvna_
  • Chain 'B':
    Compound: T. brucei GAPDH PTS1 peptide Ac-DRDAAKL
    Database cross-references and differences (RAF-indexed):
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3cvnA (A:)
ghmlqnntdypfeannpymyhenpmeeglsmlklanlaeaalafeavcqaapereeawrs
lgltqaenekdglaiialnharmldpkdiavhaalavshtnehnanaalaslrawllsqp
qyeqlgsvnlqadvdiddlnvqsedfffaapneyrecrtllhaalemnpndaqlhaslgv
lynlsnnydsaaanlrravelrpddaqlwnklgatlangnrpqealdaynraldinpgyv
rvmynmavsysnmsqydlaakqlvraiymqvggttptgeasreatrsmwdffrmllnvmn
rpdlveltyaqnvepfakefglqsmll

    Sequence, based on observed residues (ATOM records): (download) 
    >3cvnA (A:)
tdypfeannpymyhenpmeeglsmlklanlaeaalafeavcqaapereeawrslgltqae
nekdglaiialnharmldpkdiavhaalavshtnehnanaalaslrawllsqpqyeqlgs
vnlfffaapneyrecrtllhaalemnpndaqlhaslgvlynlsnnydsaaanlrravelr
pddaqlwnklgatlangnrpqealdaynraldinpgyvrvmynmavsysnmsqydlaakq
lvraiymqvggeasreatrsmwdffrmllnvmnrpdlveltyaqnvepfakefglqsmll

  • Chain 'B':
    No sequence available.