PDB entry 3cus

View 3cus on RCSB PDB site
Description: Structure of a double ILE/PHE mutant of NI-FE hydrogenase refined at 2.2 angstrom resolution
Class: oxidoreductase
Keywords: NI-FE hydrogenase tunnel mutant, Iron, Iron-sulfur, Metal-binding, Oxidoreductase, Nickel
Deposited on 2008-04-17, released 2008-08-05
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-09-07, with a file datestamp of 2011-09-02.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.187
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: Desulfovibrio fructosovorans [TaxId:878]
    Gene: hydA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3cusa_
  • Chain 'B':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: Desulfovibrio fructosovorans [TaxId:878]
    Gene: hydA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3cusb_
  • Chain 'C':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: Desulfovibrio fructosovorans [TaxId:878]
    Gene: hydA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3cusc_
  • Chain 'Q':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: Desulfovibrio fructosovorans [TaxId:878]
    Gene: hydB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18188 (Start-548)
      • engineered mutation (73)
      • engineered mutation (121)
    Domains in SCOPe 2.03: d3cusq_
  • Chain 'R':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: Desulfovibrio fructosovorans [TaxId:878]
    Gene: hydB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18188 (Start-548)
      • engineered mutation (73)
      • engineered mutation (121)
    Domains in SCOPe 2.03: d3cusr_
  • Chain 'S':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: Desulfovibrio fructosovorans [TaxId:878]
    Gene: hydB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18188 (Start-548)
      • engineered mutation (73)
      • engineered mutation (121)
    Domains in SCOPe 2.03: d3cuss_
  • Heterogens: NI, MG, SF4, F3S, FCO, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3cusA (A:)
ltakhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaal
hqalegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggv
qkakpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfyg
elvhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvq
aghpclgcsepdfwdtmtpfyeqg

    Sequence, based on observed residues (ATOM records): (download) 
    >3cusA (A:)
akhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaalhq
alegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggvqk
akpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfygel
vhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvqag
hpclgcsepdfwdtmtpfyeqg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3cusB (B:)
ltakhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaal
hqalegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggv
qkakpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfyg
elvhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvq
aghpclgcsepdfwdtmtpfyeqg

    Sequence, based on observed residues (ATOM records): (download) 
    >3cusB (B:)
akhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaalhq
alegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggvqk
akpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfygel
vhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvqag
hpclgcsepdfwdtmtpfyeqg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3cusC (C:)
ltakhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaal
hqalegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggv
qkakpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfyg
elvhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvq
aghpclgcsepdfwdtmtpfyeqg

    Sequence, based on observed residues (ATOM records): (download) 
    >3cusC (C:)
hrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaalhqal
egkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggvqkak
pnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfygelvh
dncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvqaghp
clgcsepdfwdtmtpfyeqg

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >3cusQ (Q:)
maeskptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrd
prdaqhftqracgictyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfy
hfhaldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgift
nayflgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsny
qgltkdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatdds
spekhlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkyt
klddkdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhs
tlgrtaargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgals
hwirikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhaf
dpciacgvh

    Sequence, based on observed residues (ATOM records): (download) 
    >3cusQ (Q:)
ptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprdaq
hftqracgictyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhfhal
dwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayfl
gghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqgltk
dplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspekh
latsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytklddk
dhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgrt
aargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwiri
kgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpcia
cgvh

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >3cusR (R:)
maeskptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrd
prdaqhftqracgictyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfy
hfhaldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgift
nayflgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsny
qgltkdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatdds
spekhlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkyt
klddkdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhs
tlgrtaargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgals
hwirikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhaf
dpciacgvh

    Sequence, based on observed residues (ATOM records): (download) 
    >3cusR (R:)
kptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprda
qhftqracgictyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhfha
ldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayf
lgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqglt
kdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspek
hlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytkldd
kdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgr
taargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwir
ikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpci
acgvh

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >3cusS (S:)
maeskptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrd
prdaqhftqracgictyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfy
hfhaldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgift
nayflgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsny
qgltkdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatdds
spekhlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkyt
klddkdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhs
tlgrtaargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgals
hwirikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhaf
dpciacgvh

    Sequence, based on observed residues (ATOM records): (download) 
    >3cusS (S:)
ptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprdaq
hftqracgictyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhfhal
dwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayfl
gghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqgltk
dplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspekh
latsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytklddk
dhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgrt
aargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwiri
kgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpcia
cgvh