PDB entry 3cue

View 3cue on RCSB PDB site
Description: Crystal structure of a TRAPP subassembly activating the Rab Ypt1p
Class: protein transport
Keywords: membrane traffic, GEF, tethering complex, Rab activation, guanine nucleotide exchange factor, Endoplasmic reticulum, ER-Golgi transport, Golgi apparatus, Transport, Lipoprotein, Palmitate, GTP-binding, Nucleotide-binding, Phosphoprotein, Prenylation, Protein transport
Deposited on 2008-04-16, released 2008-07-08
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-03-21, with a file datestamp of 2012-03-16.
Experiment type: XRAY
Resolution: 3.7 Å
R-factor: 0.265
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Transport protein particle 23 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: TRS23
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03784 (Start-218)
• Chain 'B':
  Compound: Transport protein particle 31 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: TRS31
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03337
• Chain 'C':
  Compound: Transport protein particle 18 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET5
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03630 (0-End)
• Chain 'D':
  Compound: Transport protein particle 22 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET3
  Database cross-references and differences (RAF-indexed):
  • Uniprot P36149 (Start-192)
• Chain 'E':
  Compound: Transport protein particle 22 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET3
  Database cross-references and differences (RAF-indexed):
  • Uniprot P36149 (Start-192)
• Chain 'F':
  Compound: GTP-binding protein YPT1
  Species: SACCHAROMYCES CEREVISIAE
  Gene: YPT1, YP2
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01123
  Domains in SCOPe 2.05: d3cuef1
• Chain 'G':
  Compound: Transport protein particle 23 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: TRS23
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03784 (Start-218)
• Chain 'H':
  Compound: Transport protein particle 31 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: TRS31
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03337
• Chain 'I':
  Compound: Transport protein particle 18 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET5
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03630 (0-End)
• Chain 'J':
  Compound: Transport protein particle 22 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET3
  Database cross-references and differences (RAF-indexed):
  • Uniprot P36149 (Start-192)
• Chain 'K':
  Compound: Transport protein particle 22 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET3
  Database cross-references and differences (RAF-indexed):
  • Uniprot P36149 (Start-192)
• Chain 'L':
  Compound: GTP-binding protein YPT1
  Species: SACCHAROMYCES CEREVISIAE
  Gene: YPT1, YP2
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01123
  Domains in SCOPe 2.05: d3cuel1
• Chain 'M':
  Compound: Transport protein particle 23 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: TRS23
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03784 (Start-218)
• Chain 'N':
  Compound: Transport protein particle 31 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: TRS31
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03337
• Chain 'O':
  Compound: Transport protein particle 18 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET5
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03630 (0-End)
• Chain 'P':
  Compound: Transport protein particle 22 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET3
  Database cross-references and differences (RAF-indexed):
  • Uniprot P36149 (Start-192)
• Chain 'Q':
  Compound: Transport protein particle 22 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET3
  Database cross-references and differences (RAF-indexed):
  • Uniprot P36149 (Start-192)
• Chain 'R':
  Compound: GTP-binding protein YPT1
  Species: SACCHAROMYCES CEREVISIAE
  Gene: YPT1, YP2
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01123
  Domains in SCOPe 2.05: d3cuer1
• Chain 'S':
  Compound: Transport protein particle 23 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: TRS23
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03784 (Start-218)
• Chain 'T':
  Compound: Transport protein particle 31 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: TRS31
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03337
• Chain 'U':
  Compound: Transport protein particle 18 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET5
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q03630 (0-End)
• Chain 'V':
  Compound: Transport protein particle 22 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET3
  Database cross-references and differences (RAF-indexed):
  • Uniprot P36149 (Start-192)
• Chain 'W':
  Compound: Transport protein particle 22 kDa subunit
  Species: SACCHAROMYCES CEREVISIAE
  Gene: BET3
  Database cross-references and differences (RAF-indexed):
  • Uniprot P36149 (Start-192)
• Chain 'X':
  Compound: GTP-binding protein YPT1
  Species: SACCHAROMYCES CEREVISIAE
  Gene: YPT1, YP2
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01123
  Domains in SCOPe 2.05: d3cuex1
• Heterogens: PLM

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  Sequence, based on SEQRES records: (download)
  

  >3cueF (F:)
  mnseydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklq
  iwdtagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvg
  nkcdlkdkrvveydvakefadankmpfletsaldstnvedafltmarqikesmsqqnlne
  ttqkkedkgnvnlkgqsltntgggcc
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3cueF (F:)
  eydylfklllignsgvgksclllrfsddyistigvdfkiktveldgktvklqiwdtagqe
  rfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvgnkcdlkdk
  rvveydvakefadankmpfletsaldstnvedafltmarqikesms
  

  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  Sequence, based on SEQRES records: (download)
  

  >3cueL (L:)
  mnseydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklq
  iwdtagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvg
  nkcdlkdkrvveydvakefadankmpfletsaldstnvedafltmarqikesmsqqnlne
  ttqkkedkgnvnlkgqsltntgggcc
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3cueL (L:)
  eydylfklllignsgvgksclllrfsddyistigvdfkiktveldgktvklqiwdtagqe
  rfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvgnkcdlkdk
  rvveydvakefadankmpfletsaldstnvedafltmarqikesms
  

  
  
• Chain 'M':
  No sequence available.
  
  
• Chain 'N':
  No sequence available.
  
  
• Chain 'O':
  No sequence available.
  
  
• Chain 'P':
  No sequence available.
  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  Sequence, based on SEQRES records: (download)
  

  >3cueR (R:)
  mnseydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklq
  iwdtagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvg
  nkcdlkdkrvveydvakefadankmpfletsaldstnvedafltmarqikesmsqqnlne
  ttqkkedkgnvnlkgqsltntgggcc
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3cueR (R:)
  eydylfklllignsgvgksclllrfsddyistigvdfkiktveldgktvklqiwdtagqe
  rfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvgnkcdlkdk
  rvveydvakefadankmpfletsaldstnvedafltmarqikesms
  

  
  
• Chain 'S':
  No sequence available.
  
  
• Chain 'T':
  No sequence available.
  
  
• Chain 'U':
  No sequence available.
  
  
• Chain 'V':
  No sequence available.
  
  
• Chain 'W':
  No sequence available.
  
  
• Chain 'X':
  Sequence, based on SEQRES records: (download)
  

  >3cueX (X:)
  mnseydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklq
  iwdtagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvg
  nkcdlkdkrvveydvakefadankmpfletsaldstnvedafltmarqikesmsqqnlne
  ttqkkedkgnvnlkgqsltntgggcc
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3cueX (X:)
  eydylfklllignsgvgksclllrfsddyistigvdfkiktveldgktvklqiwdtagqe
  rfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvgnkcdlkdk
  rvveydvakefadankmpfletsaldstnvedafltmarqikesms