PDB entry 3cqr

View 3cqr on RCSB PDB site
Description: Crystal Structure of the Lipocalin domain of Violaxanthin de-epoxidase (VDE) at pH5
Deposited on 2008-04-03, released 2009-04-21
The last revision was dated 2012-12-26, with a file datestamp of 2012-12-21.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.209
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Violaxanthin de-epoxidase, chloroplast
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: VDE1, AVDE1, NPQ1, VXDE
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Violaxanthin de-epoxidase, chloroplast
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: VDE1, AVDE1, NPQ1, VXDE
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3cqrA (A:)
mdlgefpapdpsvlvqnfnisdfngkwyitsglnptfdafdcqlhefhtegdnklvgnis
wriktldsgfftrsavqkfvqdpnqpgvlynhdneylhyqddwyilsskienkpedyifv
yyrgrndawdgyggavvytrssvlpnsiipelekaaksigrdfstfirtdntcgpeprsh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >3cqrA (A:)
efpapdpsvlvqnfnisdfngkwyitsglnptfdafdcqlhefhtegdnklvgniswrik
tldsgfftrsavqkfvqdpnqpgvlynhdneylhyqddwyilsskienkpedyifvyyrg
rndawdgyggavvytrssvlpnsiipelekaaksigrdfstfirtdntcgp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3cqrB (B:)
mdlgefpapdpsvlvqnfnisdfngkwyitsglnptfdafdcqlhefhtegdnklvgnis
wriktldsgfftrsavqkfvqdpnqpgvlynhdneylhyqddwyilsskienkpedyifv
yyrgrndawdgyggavvytrssvlpnsiipelekaaksigrdfstfirtdntcgpeprsh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >3cqrB (B:)
fpapdpsvlvqnfnisdfngkwyitsglnptfdafdcqlhefhtegdnklvgniswrikt
ldsgfftrsavqkfvqdpnqpgvlynhdneylhyqddwyilsskienkpedyifvyyrgr
ndawdgyggavvytrssvlpnsiipelekaaksigrdfstfirtdntcgp