PDB entry 3cf8
View 3cf8 on RCSB PDB site
Description: Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with quercetin
Class: Lyase
Keywords: FabZ complex, quercetin, Cytoplasm, Lipid A biosynthesis, Lipid synthesis, Lyase
Deposited on
2008-03-03, released
2008-12-09
The last revision prior to the SCOPe 2.04 freeze date was dated
2008-12-09, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.193
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
Species: Helicobacter pylori [TaxId:210]
Gene: FabZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3cf8a_ - Chain 'B':
Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
Species: Helicobacter pylori [TaxId:210]
Gene: FabZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3cf8b_ - Chain 'C':
Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
Species: Helicobacter pylori [TaxId:210]
Gene: FabZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3cf8c_ - Chain 'D':
Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
Species: Helicobacter pylori [TaxId:210]
Gene: FabZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3cf8d_ - Chain 'E':
Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
Species: Helicobacter pylori [TaxId:210]
Gene: FabZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3cf8e_ - Chain 'F':
Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
Species: Helicobacter pylori [TaxId:210]
Gene: FabZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3cf8f_ - Heterogens: CL, BEN, QUE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3cf8A (A:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
Sequence, based on observed residues (ATOM records): (download)
>3cf8A (A:)
lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
vlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlk
hkgmiwqvggtaqvdgkvvaeaelkamiaere
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3cf8B (B:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
Sequence, based on observed residues (ATOM records): (download)
>3cf8B (B:)
qffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgvli
vegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkhkg
miwqvggtaqvdgkvvaeaelkamiaere
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3cf8C (C:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
Sequence, based on observed residues (ATOM records): (download)
>3cf8C (C:)
qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
livegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkh
kgmiwqvggtaqvdgkvvaeaelkamiaer
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3cf8D (D:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
Sequence, based on observed residues (ATOM records): (download)
>3cf8D (D:)
lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
vlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlk
hkgmiwqvggtaqvdgkvvaeaelkamiaere
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3cf8E (E:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
Sequence, based on observed residues (ATOM records): (download)
>3cf8E (E:)
qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
livegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkh
kgmiwqvggtaqvdgkvvaeaelkamiaere
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3cf8F (F:)
meqshqnlqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfp
nkpifpgvlivegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrle
yhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
Sequence, based on observed residues (ATOM records): (download)
>3cf8F (F:)
qffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgvli
vegmaqsggflaftslwgfdpeiaktkivyfmtidkvkfripvtpgdrleyhlevlkhkg
miwqvggtaqvdgkvvaeaelkamiae