PDB entry 3cf2

View 3cf2 on RCSB PDB site
Description: structure of p97/vcp in complex with adp/amp-pnp
Deposited on 2008-03-01, released 2008-04-22
The last revision was dated 2012-03-07, with a file datestamp of 2012-03-02.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.271
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ADP, ANP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3cf2A (A:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
gledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgcgktllakaianecqanfi
sikgpelltmwfgeseanvreifdkarqaapcvlffdeldsiakarggnigdgggaadrv
inqiltemdgmstkknvfiigatnrpdiidpailrpgrldqliyiplpdeksrvailkan
lrkspvakdvdleflakmtngfsgadlteicqracklairesieseirrererqtnpsam
eveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtlqqsrgfgsfrfpsgnqgg
agpsqgsgggtggsvytedndddlyg

    Sequence, based on observed residues (ATOM records):
    >3cf2A (A:)
nrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsde
kirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyfl
eayrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslne
vgyddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravan
etgaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgev
errivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrlei
lqihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidae
vmnslavtmddfrwalsqsnpsalretvvevpqvtwediggledvkrelqelvqypvehp
dkflkfgmtpskgvlfygppgcgktllakaianecqanfisikgpelltmwfgeseanvr
eifdkarqaapcvlffdeldsiadrvinqiltemdgmstkknvfiiganrpdiidpailr
pgrldqliyiksrvailkanlrksakddlteicqracklairesievpehfeeamemfa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3cf2B (B:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
gledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgcgktllakaianecqanfi
sikgpelltmwfgeseanvreifdkarqaapcvlffdeldsiakarggnigdgggaadrv
inqiltemdgmstkknvfiigatnrpdiidpailrpgrldqliyiplpdeksrvailkan
lrkspvakdvdleflakmtngfsgadlteicqracklairesieseirrererqtnpsam
eveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtlqqsrgfgsfrfpsgnqgg
agpsqgsgggtggsvytedndddlyg

    Sequence, based on observed residues (ATOM records):
    >3cf2B (B:)
nrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsde
kirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyfl
eayrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslne
vgyddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravan
etgaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgev
errivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrlei
lqihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidae
vmnslavtmddfrwalsqsnpsalretvvevpqvtwediggledvkrelqelvqypvehp
dkflkfgmtpskgvlfygppgcgktllakaianecqanfisikgpelltmwfgeseanvr
eifdkarqaapcvlffdeldsiadrvinqiltemdgmstkknvfiiganrpdiidpailr
pgrldqliyiksrvailkanlrksakddlteicqracklairesievpehfeeamemfa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3cf2C (C:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
gledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgcgktllakaianecqanfi
sikgpelltmwfgeseanvreifdkarqaapcvlffdeldsiakarggnigdgggaadrv
inqiltemdgmstkknvfiigatnrpdiidpailrpgrldqliyiplpdeksrvailkan
lrkspvakdvdleflakmtngfsgadlteicqracklairesieseirrererqtnpsam
eveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtlqqsrgfgsfrfpsgnqgg
agpsqgsgggtggsvytedndddlyg

    Sequence, based on observed residues (ATOM records):
    >3cf2C (C:)
nrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsde
kirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyfl
eayrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslne
vgyddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravan
etgaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgev
errivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrlei
lqihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidae
vmnslavtmddfrwalsqsnpsalretvvevpqvtwediggledvkrelqelvqypvehp
dkflkfgmtpskgvlfygppgcgktllakaianecqanfisikgpelltmwfgeseanvr
eifdkarqaapcvlffdeldsiadrvinqiltemdgmstkknvfiiganrpdiidpailr
pgrldqliyiksrvailkanlrksakddlteicqracklairesievpehfeeamemfa

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3cf2D (D:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
gledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgcgktllakaianecqanfi
sikgpelltmwfgeseanvreifdkarqaapcvlffdeldsiakarggnigdgggaadrv
inqiltemdgmstkknvfiigatnrpdiidpailrpgrldqliyiplpdeksrvailkan
lrkspvakdvdleflakmtngfsgadlteicqracklairesieseirrererqtnpsam
eveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtlqqsrgfgsfrfpsgnqgg
agpsqgsgggtggsvytedndddlyg

    Sequence, based on observed residues (ATOM records):
    >3cf2D (D:)
nrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsde
kirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyfl
eayrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslne
vgyddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravan
etgaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgev
errivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrlei
lqihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidae
vmnslavtmddfrwalsqsnpsalretvvevpqvtwediggledvkrelqelvqypvehp
dkflkfgmtpskgvlfygppgcgktllakaianecqanfisikgpelltmwfgeseanvr
eifdkarqaapcvlffdeldsiadrvinqiltemdgmstkknvfiiganrpdiidpailr
pgrldqliyiksrvailkanlrksakddlteicqracklairesievpehfeeamemfa