PDB entry 3cf0

View 3cf0 on RCSB PDB site
Description: Structure of D2 subdomain of P97/VCP in complex with ADP
Class: transport protein
Keywords: AAA, P97/VCP, ERAD, CDC48, ATP-binding, Lipid-binding, Nucleotide-binding, Nucleus, Phosphoprotein, Transport, Ubl conjugation pathway, TRANSPORT PROTEIN
Deposited on 2008-03-01, released 2008-04-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.244
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0a_
  • Chain 'B':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0b_
  • Chain 'C':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0c_
  • Chain 'D':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0d_
  • Chain 'E':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0e_
  • Chain 'F':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0f_
  • Chain 'G':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0g_
  • Chain 'H':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0h_
  • Chain 'I':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0j_
  • Chain 'K':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0k_
  • Chain 'L':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3cf0l_
  • Chain 'M':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Mus musculus [TaxId:10090]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ADP

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3cf0A (A:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0A (A:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3cf0B (B:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0B (B:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3cf0C (C:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0C (C:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3cf0D (D:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0D (D:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3cf0E (E:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0E (E:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3cf0F (F:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0F (F:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3cf0G (G:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0G (G:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3cf0H (H:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0H (H:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >3cf0J (J:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0J (J:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >3cf0K (K:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0K (K:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >3cf0L (L:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseirrererqtnpsameveeddpvpeirrdhfeeamrfarrsvsdndirkyemfaqtl
q

    Sequence, based on observed residues (ATOM records): (download) 
    >3cf0L (L:)
alretvvevpqvtwediggledvkrelqelvqypvehpdkflkfgmtpskgvlfygppgc
gktllakaianecqanfisikgpelltmwfgeseanvreifdkarqaapcvlffdeldsi
akarggnigdgggaadrvinqiltemdgmstkknvfiigatnrpdiidpailrpgrldql
iyiplpdeksrvailkanlrkspvakdvdleflakmtngfsgadlteicqracklaires
ieseivpeirrdhfeeamrfarrsvsdndirkyemfaqtlq

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.