PDB entry 3ces

View 3ces on RCSB PDB site
Description: crystal structure of e.coli mnmg (gida), a highly-conserved trna modifying enzyme
Deposited on 2008-02-29, released 2009-03-03
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
    Species: Escherichia coli [TaxId:562]
    Gene: gidA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6U3 (22-End)
      • expression tag (13-21)
  • Chain 'B':
    Compound: tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
    Species: Escherichia coli [TaxId:562]
    Gene: gidA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6U3 (22-End)
      • expression tag (21)
  • Chain 'C':
    Compound: tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
    Species: Escherichia coli [TaxId:562]
    Gene: gidA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
    Species: Escherichia coli [TaxId:562]
    Gene: gidA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6U3 (22-End)
      • expression tag (21)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3cesA (A:)
mgsshhhhhhhhssglvprgshmfypdpfdviiiggghagteaamaaarmgqqtlllthn
idtlgqmscnpaiggigkghlvkevdalgglmakaidqagiqfrilnaskgpavratraq
adrvlyrqavrtalenqpnlmifqqavedlivendrvvgavtqmglkfrakavvltvgtf
ldgkihigldnysggragdppsiplsrrlrelplrvgrlktgtppridartidfsvlaqq
hgdnpmpvfsfmgnasqhpqqvpcyithtnekthdvirsnldrspmyagviegvgprycp
siedkvmrfadrnqhqiflepegltsneiypngistslpfdvqmqivrsmqgmenakivr
pgyaieydffdprdlkptleskfiqglffagqingttgyeeaaaqgllaglnaarlsadk
egwaparsqaylgvlvddlctlgtkepyrmftsraeyrlmlrednadlrlteigrelglv
dderwarfnekleniererqrlkstwvtpsaeaaaevnahltaplsreasgedllrrpem
tyeklttltpfapaltdeqaaeqveiqvkyegyiarqqdeiekqlrnentllpatldyrq
vsglsneviaklndhkpasigqasrisgvtpaaisillvwlkkqgmlrrsa

    Sequence, based on observed residues (ATOM records):
    >3cesA (A:)
sglvprgshmfypdpfdviiiggghagteaamaaarmgqqtlllthnidtlgqmscnpai
ggigkghlvkevdalgglmakaidqagiqfrilnaskgpavratraqadrvlyrqavrta
lenqpnlmifqqavedlivendrvvgavtqmglkfrakavvltvgtfldgkihigsipls
rrlrelplrvgrlktgtppridartidfsvlaqqhgdnpmpvfsfmgnasqhpqqvpcyi
thtnekthdvirsnldrspsiedkvmrfadrnqhqiflepegltsneiypngistslpfd
vqmqivrsmqgmenakivrpgyaieydffdprdlkptleskfiqglffagqingttgyee
aaaqgllaglnaarlsadkegwaparsqaylgvlvddlctlgtkepyrmftsraeyrlml
rednadlrlteigrelglvdderwarfnekleniererqrlkstwvtpsaeaaaevnahl
taplsreasgedllrrpemtyeklttltpfapaltdeqaaeqveiqvkyeg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3cesB (B:)
mgsshhhhhhhhssglvprgshmfypdpfdviiiggghagteaamaaarmgqqtlllthn
idtlgqmscnpaiggigkghlvkevdalgglmakaidqagiqfrilnaskgpavratraq
adrvlyrqavrtalenqpnlmifqqavedlivendrvvgavtqmglkfrakavvltvgtf
ldgkihigldnysggragdppsiplsrrlrelplrvgrlktgtppridartidfsvlaqq
hgdnpmpvfsfmgnasqhpqqvpcyithtnekthdvirsnldrspmyagviegvgprycp
siedkvmrfadrnqhqiflepegltsneiypngistslpfdvqmqivrsmqgmenakivr
pgyaieydffdprdlkptleskfiqglffagqingttgyeeaaaqgllaglnaarlsadk
egwaparsqaylgvlvddlctlgtkepyrmftsraeyrlmlrednadlrlteigrelglv
dderwarfnekleniererqrlkstwvtpsaeaaaevnahltaplsreasgedllrrpem
tyeklttltpfapaltdeqaaeqveiqvkyegyiarqqdeiekqlrnentllpatldyrq
vsglsneviaklndhkpasigqasrisgvtpaaisillvwlkkqgmlrrsa

    Sequence, based on observed residues (ATOM records):
    >3cesB (B:)
hmfypdpfdviiiggghagteaamaaarmgqqtlllthnidtlgqmscnpaiggigkghl
vkevdalgglmakaidqagiqfrilnaskgpavratraqadrvlyrqavrtalenqpnlm
ifqqavedlivendrvvgavtqmglkfrakavvltvgtfldgkihigsiplsrrlrelpl
rvgrlktgtppridartidfsvlaqqhgdnpmpvfsfmgnasqhpqqvpcyithtnekth
dvirsnlsiedkvmrfadrnqhqiflepegltsneiypngistslpfdvqmqivrsmqgm
enakivrpgyaieydffdprdlkptleskfiqglffagqingttgyeeaaaqgllaglna
arlsadkegwaparsqaylgvlvddlctlgtkepyrmftsraeyrlmlrednadlrltei
grelglvdderwarfnekleniererqrlkstwvtpsaeaaaevnahltaplsreasged
llrrpemtyeklttltpfapaltdeqaaeqveiqvkyeg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3cesC (C:)
mgsshhhhhhhhssglvprgshmfypdpfdviiiggghagteaamaaarmgqqtlllthn
idtlgqmscnpaiggigkghlvkevdalgglmakaidqagiqfrilnaskgpavratraq
adrvlyrqavrtalenqpnlmifqqavedlivendrvvgavtqmglkfrakavvltvgtf
ldgkihigldnysggragdppsiplsrrlrelplrvgrlktgtppridartidfsvlaqq
hgdnpmpvfsfmgnasqhpqqvpcyithtnekthdvirsnldrspmyagviegvgprycp
siedkvmrfadrnqhqiflepegltsneiypngistslpfdvqmqivrsmqgmenakivr
pgyaieydffdprdlkptleskfiqglffagqingttgyeeaaaqgllaglnaarlsadk
egwaparsqaylgvlvddlctlgtkepyrmftsraeyrlmlrednadlrlteigrelglv
dderwarfnekleniererqrlkstwvtpsaeaaaevnahltaplsreasgedllrrpem
tyeklttltpfapaltdeqaaeqveiqvkyegyiarqqdeiekqlrnentllpatldyrq
vsglsneviaklndhkpasigqasrisgvtpaaisillvwlkkqgmlrrsa

    Sequence, based on observed residues (ATOM records):
    >3cesC (C:)
mfypdpfdviiiggghagteaamaaarmgqqtlllthnidtlgqmscnpaiggigkghlv
kevdalgglmakaidqagiqfrilnaskgpavratraqadrvlyrqavrtalenqpnlmi
fqqavedlivendrvvgavtqmglkfrakavvltvgtfldgkihigsiplsrrlrelplr
vgrlktgtppridartidfsvlaqqhgdnpmpvfsfmgnasqhpqqvpcyithtnekthd
virsnldrspsiedkvmrfadrnqhqiflepegltsneiypngistslpfdvqmqivrsm
qgmenakivrpgyaieydffdprdlkptleskfiqglffagqingttgyeeaaaqgllag
lnaarlsadkegwaparsqaylgvlvddlctlgtkepyrmftsraeyrlmlrednadlrl
teigrelglvdderwarfnekleniererqrlkstwvtpsaaaevnhltaplssgedllr
rpemtyeklttltpfapaltdeqaaeqveiqvkyeg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3cesD (D:)
mgsshhhhhhhhssglvprgshmfypdpfdviiiggghagteaamaaarmgqqtlllthn
idtlgqmscnpaiggigkghlvkevdalgglmakaidqagiqfrilnaskgpavratraq
adrvlyrqavrtalenqpnlmifqqavedlivendrvvgavtqmglkfrakavvltvgtf
ldgkihigldnysggragdppsiplsrrlrelplrvgrlktgtppridartidfsvlaqq
hgdnpmpvfsfmgnasqhpqqvpcyithtnekthdvirsnldrspmyagviegvgprycp
siedkvmrfadrnqhqiflepegltsneiypngistslpfdvqmqivrsmqgmenakivr
pgyaieydffdprdlkptleskfiqglffagqingttgyeeaaaqgllaglnaarlsadk
egwaparsqaylgvlvddlctlgtkepyrmftsraeyrlmlrednadlrlteigrelglv
dderwarfnekleniererqrlkstwvtpsaeaaaevnahltaplsreasgedllrrpem
tyeklttltpfapaltdeqaaeqveiqvkyegyiarqqdeiekqlrnentllpatldyrq
vsglsneviaklndhkpasigqasrisgvtpaaisillvwlkkqgmlrrsa

    Sequence, based on observed residues (ATOM records):
    >3cesD (D:)
hmfypdpfdviiiggghagteaamaaarmgqqtlllthnidtlgqmscnpaiggigkghl
vkevdalgglmakaidqagiqfrilnaskgpavratraqadrvlyrqavrtalenqpnlm
ifqqavedlivendrvvgavtqmglkfrakavvltvgtfldgkisiplsrrlrelplrvg
rlktgtppridartidfsvlaqqhgdnpmpvfsfmgnasqhpqqvpcyithtnekthdvi
rsnlsiedkvmrnqhqiflepegltsneiypngistslpfdvqmqivrsmqgmenakivr
pgyaieydffdprdlkptleskfiqglffagqingttgyeeaaaqgllaglnaarlsadk
egwaparsqaylgvlvddlctlgtkepyrmftsraeyrlmlrednadlrlteigrelglv
dderwarfnekleniererqrlkstwpsaeaaaevnahltaplssgedllrrpemtyekl
ttltpfapaltdeqaaeqveiqvkyeg