PDB entry 3cdw

View 3cdw on RCSB PDB site
Description: Crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase (3Dpol) in complex with protein primer VPg and a pyrophosphate
Class: Transferase/VIRAL PROTEIN
Keywords: coxsackievirus, RNA-dependent RNA polymerase, protein primer, VPg, VIZIER Viral Enzymes Involved in Replication, Transferase-VIRAL PROTEIN COMPLEX
Deposited on 2008-02-27, released 2008-07-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.183
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-directed RNA polymerase 3D-POL
    Species: Coxsackievirus B3 [TaxId:103903]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03313 (0-461)
      • expression tag (462-467)
    Domains in SCOPe 2.08: d3cdwa1, d3cdwa2
  • Chain 'H':
    Compound: Protein 3B
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CL, ACT, POP, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3cdwA (A:)
geiefiesskdagfpvintpsktklepsvfhqvfegnkepavlrsgdprlkanfeeaifs
kyignvnthvdeymleavdhyagqlatldistepmkledavygteglealdlttsagypy
valgikkrdilskktkdltklkecmdkyglnlpmvtyvkdelrsiekvakgksrlieass
lndsvamrqtfgnlyktfhlnpgvvtgsavgcdpdlfwskipvmldghliafdysgydas
lspvwfaclkmlleklgythketnyidylcnshhlyrdkhyfvrggmpsgcsgtsifnsm
inniiirtlmlkvykgidldqfrmiaygddviasypwpidasllaeagkgyglimtpadk
gecfnevtwtnatflkryfradeqypflvhpvmpmkdihesirwtkdpkntqdhvrslcl
lawhngeheyeefirkirsvpvgrcltlpafstlrrkwldsfhhhhhh

  • Chain 'H':
    No sequence available.