PDB entry 3ca6

View 3ca6 on RCSB PDB site
Description: Sambucus nigra agglutinin II (SNA-II)- tetragonal crystal form- complexed to Tn antigen
Class: SUGAR BINDING PROTEIN, Plant Protein
Keywords: BETA-TREFOIL, RICIN-B DOMAIN, GLYCOSYLATION, LECTIN, Glycoprotein, SUGAR BINDING PROTEIN, Plant Protein
Deposited on 2008-02-19, released 2008-11-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Agglutinin II
    Species: Sambucus nigra
    Database cross-references and differences (RAF-indexed):
    • Uniprot P33183 (0-End)
      • see remark 999 (223)
    Domains in SCOPe 2.08: d3ca6a1, d3ca6a2
  • Heterogens: NAG, A2G, SO4, ACT, SER, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ca6A (A:)
tsftrnivgrdglcvdvrngydtdgtplqlwpcgtqrnqrwtfdsddtirsmgkcmtang
lnngsnivifncstaaenaikwevpidgsiinpssglvmtapraasrtillledniyaas
qgwtvtnnvkpivasivgykemclqsngenngvwmedceatslqqqwalygdrtirvnst
rglcvttngynskdliiilkcqglpsqrwffnsdgaivnpksrlvmdvrasnvslreiii
fpatgnpnqqwvtqvlps

    Sequence, based on observed residues (ATOM records): (download) 
    >3ca6A (A:)
tsftrnivgrdglcvdvrngydtdgtplqlwpcgtqrnqrwtfdsddtirsmgkcmtang
lnngsnivifncstaaenaikwevpidgsiinpssglvmtapraasrtillledniyaas
qgwtvtnnvkpivasivgykemclqsngenngvwmedceatslqqqwalygdrtirvnst
rglcvttngynskdliiilkcqglpsqrwffnsdgaivnpksrlvmdvrasnvslreiii
fpatgnpnqqwvtqvlp