PDB entry 3ca3

View 3ca3 on RCSB PDB site
Description: Crystal structure of Sambucus Nigra Agglutinin II (SNA-II)-tetragonal crystal form- complexed to N-Acetylgalactosamine
Class: SUGAR BINDING PROTEIN, Plant protein
Keywords: BETA-TREFOIL, RICIN-B DOMAIN, GLYCOSYLATION, LECTIN, Glycoprotein, SUGAR BINDING PROTEIN, Plant protein
Deposited on 2008-02-19, released 2008-11-25
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: 0.125
AEROSPACI score: 0.67 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Agglutinin II
    Species: Sambucus nigra
    Database cross-references and differences (RAF-indexed):
    • Uniprot P33183 (0-End)
      • see remark 999 (223)
    Domains in SCOPe 2.05: d3ca3a1, d3ca3a2
  • Heterogens: NAG, A2G, NGA, SO4, ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ca3A (A:)
tsftrnivgrdglcvdvrngydtdgtplqlwpcgtqrnqrwtfdsddtirsmgkcmtang
lnngsnivifncstaaenaikwevpidgsiinpssglvmtapraasrtillledniyaas
qgwtvtnnvkpivasivgykemclqsngenngvwmedceatslqqqwalygdrtirvnst
rglcvttngynskdliiilkcqglpsqrwffnsdgaivnpksrlvmdvrasnvslreiii
fpatgnpnqqwvtqvlps

    Sequence, based on observed residues (ATOM records): (download) 
    >3ca3A (A:)
tsftrnivgrdglcvdvrngydtdgtplqlwpcgtqrnqrwtfdsddtirsmgkcmtang
lnngsnivifncstaaenaikwevpidgsiinpssglvmtapraasrtillledniyaas
qgwtvtnnvkpivasivgykemclqsngenngvwmedceatslqqqwalygdrtirvnst
rglcvttngynskdliiilkcqglpsqrwffnsdgaivnpksrlvmdvrasnvslreiii
fpatgnpnqqwvtqvlp