PDB entry 3c8k
View 3c8k on RCSB PDB site
Description: The crystal structure of Ly49C bound to H-2Kb
Class: immune system
Keywords: Natural killer cell receptor; MHC; Virus; Crystal structure, Glycoprotein, Immune response, Membrane, MHC I, Transmembrane, Immunoglobulin domain, Secreted, IMMUNE SYSTEM
Deposited on
2008-02-12, released
2008-04-15
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-04-28, with a file datestamp of
2009-04-24.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.201
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: h-2 class I histocompatibility antigen, k-b alpha chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3c8ka1, d3c8ka2 - Chain 'B':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3c8kb_ - Chain 'D':
Compound: Natural killer cell receptor Ly-49C
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot Q61198 (0-124)
- engineered (33)
- engineered (55)
- engineered (85)
Domains in SCOPe 2.05: d3c8kd_ - Chain 'P':
Compound: Ovalbumin peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3c8kA (A:)
gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrw
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3c8kB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3c8kD (D:)
rgvkywfcystkcyyfimnkttwsgckancqhygvpilkiededelkflqrhvipgnywi
glsydkkkkewawidngpskldmkikkmnfksrgcvflskariedidcnipyycicgkkl
dkfpd
- Chain 'P':
No sequence available.