PDB entry 3c8g

View 3c8g on RCSB PDB site
Description: Crystal structure of a possible transciptional regulator YggD from Shigella flexneri 2a str. 2457T
Class: transcription regulator
Keywords: APC27974, YggD, Mannitol operon repressor, Shigella flexneri 2a str. 2457T, methylation, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSCRIPTION REGULATOR
Deposited on 2008-02-12, released 2008-02-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative transcriptional regulator
    Species: Shigella flexneri [TaxId:198215]
    Gene: yggD, S3120, SF2919
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83Q96 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3c8ga1, d3c8ga2
  • Chain 'B':
    Compound: Putative transcriptional regulator
    Species: Shigella flexneri [TaxId:198215]
    Gene: yggD, S3120, SF2919
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3c8gb1
  • Chain 'C':
    Compound: Putative transcriptional regulator
    Species: Shigella flexneri [TaxId:198215]
    Gene: yggD, S3120, SF2919
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83Q96 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3c8gc2, d3c8gc3
  • Chain 'D':
    Compound: Putative transcriptional regulator
    Species: Shigella flexneri [TaxId:198215]
    Gene: yggD, S3120, SF2919
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3c8gd1
  • Heterogens: ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3c8gA (A:)
snamatlteddvleqldaqdnlfsfmktahsillqgirqflpslfvdndeeiveyavkpl
laqsgplddidvalrliyalgkmdkwlyadithfsqywhylneqdetpgfadditwdfis
nvnsitrnatlydalkamkfadfavwsearfsgmvktaltlavtttlkeltp

    Sequence, based on observed residues (ATOM records): (download) 
    >3c8gA (A:)
amatlteddvleqldaqdnlfsfmktahsillqgirqflpslfvdndeeiveyavkplla
qsgplddidvalrliyalgkmdkwlyadithfsqywhylneqdetpgfadditwdfisnv
nsitrnatlydalkamkfavwsearfsgmvktaltlavtttlkelt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3c8gB (B:)
snamatlteddvleqldaqdnlfsfmktahsillqgirqflpslfvdndeeiveyavkpl
laqsgplddidvalrliyalgkmdkwlyadithfsqywhylneqdetpgfadditwdfis
nvnsitrnatlydalkamkfadfavwsearfsgmvktaltlavtttlkeltp

    Sequence, based on observed residues (ATOM records): (download) 
    >3c8gB (B:)
tlteddvleqldaqdnlfsfmktahsillqgirqflpslfvdndeeiveyavkpllaqsg
plddidvalrliyalgkmdkwlyadithfsqywhylneqdetpgfadditwdfisnvnsi
trnatlydalkamkfadfavwsearfsgmvktaltlavtttlkelt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3c8gC (C:)
snamatlteddvleqldaqdnlfsfmktahsillqgirqflpslfvdndeeiveyavkpl
laqsgplddidvalrliyalgkmdkwlyadithfsqywhylneqdetpgfadditwdfis
nvnsitrnatlydalkamkfadfavwsearfsgmvktaltlavtttlkeltp

    Sequence, based on observed residues (ATOM records): (download) 
    >3c8gC (C:)
amatlteddvleqldaqdnlfsfmktahsillqgirqflpslfvdndeeiveyavkplla
qsgplddidvalrliyalgkmdkwlyadithfsqywhylneqdetpgfadditwdfisnv
nsitrnatlydalkamkfadvwsearfsgmvktaltlavtttlkelt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3c8gD (D:)
snamatlteddvleqldaqdnlfsfmktahsillqgirqflpslfvdndeeiveyavkpl
laqsgplddidvalrliyalgkmdkwlyadithfsqywhylneqdetpgfadditwdfis
nvnsitrnatlydalkamkfadfavwsearfsgmvktaltlavtttlkeltp

    Sequence, based on observed residues (ATOM records): (download) 
    >3c8gD (D:)
atlteddvleqldaqdnlfsfmktahsillqgirqflpslfvdndeeiveyavkpllaqs
gplddidvalrliyalgkmdkwlyadithfsqywhylneqdetpgfadditwdfisnvns
itrnatlydalkamkfaearfsgmvktaltlavtttlkelt