PDB entry 3c5f
View 3c5f on RCSB PDB site
Description: Structure of a binary complex of the R517A Pol lambda mutant
Class: Transferase, Lyase/DNA
Keywords: helix hairpin helix, DNA damage, DNA repair, DNA replication, DNA synthesis, DNA-binding, DNA-directed DNA polymerase, Lyase, Manganese, Metal-binding, Nucleotidyltransferase, Nucleus, Phosphoprotein, Polymorphism, Transferase, Lyase-DNA COMPLEX
Deposited on
2008-01-31, released
2008-09-02
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-25, with a file datestamp of
2017-10-20.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase lambda
Species: HOMO SAPIENS
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c5fa1, d3c5fa2, d3c5fa3 - Chain 'B':
Compound: DNA polymerase lambda
Species: HOMO SAPIENS
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c5fb1, d3c5fb2, d3c5fb3 - Chain 'D':
Compound: DNA (5'-d(p*dgp*dcp*dcp*dg)-3')
- Chain 'E':
Compound: DNA (5'-d(p*dgp*dcp*dcp*dg)-3')
- Chain 'P':
Compound: DNA (5'-d(*dcp*dap*dgp*dtp*dap*dc)-3')
- Chain 'Q':
Compound: DNA (5'-d(*dcp*dap*dgp*dtp*dap*dc)-3')
- Chain 'T':
Compound: DNA (5'-d(*dcp*dgp*dgp*dcp*dcp*dgp*dtp*dap*dcp*dtp*dg)-3')
- Chain 'U':
Compound: DNA (5'-d(*dcp*dgp*dgp*dcp*dcp*dgp*dtp*dap*dcp*dtp*dg)-3')
- Heterogens: NA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3c5fA (A:)
maqpssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeac
sipgigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsl
edirsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrr
gkatcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlp
gpgrrhrrldiivvpysefacallyftgsahfnrsmaalaktkgmslsehalstavvrnt
hgckvgpgrvlptptekdvfrllglpyrepaerdw
Sequence, based on observed residues (ATOM records): (download)
>3c5fA (A:)
tnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkrm
aekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqasl
ttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvd
vlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrl
diivvpysefacallyftgsahfnrsmaalaktkgmslsehalstavvrnthgckvgpgr
vlptptekdvfrllglpyrepaerdw
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3c5fB (B:)
maqpssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeac
sipgigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsl
edirsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrr
gkatcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlp
gpgrrhrrldiivvpysefacallyftgsahfnrsmaalaktkgmslsehalstavvrnt
hgckvgpgrvlptptekdvfrllglpyrepaerdw
Sequence, based on observed residues (ATOM records): (download)
>3c5fB (B:)
tnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkrm
aekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqasl
ttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvd
vlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrl
diivvpysefacallyftgsahfnrsmaalaktkgmslsehalstavvrnthgckvgpgr
vlptptekdvfrllglpyrepaerdw
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.
- Chain 'T':
No sequence available.
- Chain 'U':
No sequence available.