PDB entry 3c2u

View 3c2u on RCSB PDB site
Description: Structure of the two subsite D-xylosidase from Selenomonas ruminantium in complex with 1,3-bis[tris(hydroxymethyl)methylamino]propane
Class: hydrolase
Keywords: Tetramer; Glycoside Hydrolase; GH43; alpha-L-Arabinofuranosidase
Deposited on 2008-01-25, released 2008-04-22
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: 0.136
AEROSPACI score: 0.78 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Xylosidase/arabinosidase
    Species: Selenomonas ruminantium [TaxId:971]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3c2ua1, d3c2ua2
  • Chain 'B':
    Compound: Xylosidase/arabinosidase
    Species: Selenomonas ruminantium [TaxId:971]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3c2ub1, d3c2ub2
  • Chain 'C':
    Compound: Xylosidase/arabinosidase
    Species: Selenomonas ruminantium [TaxId:971]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3c2uc1, d3c2uc2
  • Chain 'D':
    Compound: Xylosidase/arabinosidase
    Species: Selenomonas ruminantium [TaxId:971]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3c2ud1, d3c2ud2
  • Heterogens: B3P, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3c2uA (A:)
mniqnpvlkgfnpdpsivragddyyiatstfewfpgvqihhskdlvhwhlvahplsttef
ldmkgnpdsggiwapdlsyadgkfwliytdvkvvdgmwkdchnylttaedikgpwskpil
lngagfdaslfhdpsgkkylvnmywdqrvyhhnfygialqeysvaeekligkpeiiykgt
diaytegphlyyindmyylmtaeggttyqhsetiarsktihgpyeiqpdypllsawkevh
nplqkcghaslvetqngqwylahltgrplpapagfpsrereqhafcplgretaiqkiewq
dgwpvvvggqqgsleveapdlpqqewaptyeerddfdkdtlninfqtlripfsehlgslt
arpgflrlygreslqskftqahiarrwqsfnfdagtsvefspnsfqqmagltcyyntenw
ssihvtwneekgriidlvtadngtfsmplagaeipipdevktvhfkvsvrgriyqyaysf
dgetfhtlpielpswklsddyvrgggfftgafvginaiditgtalpadfdyftykeld

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3c2uB (B:)
mniqnpvlkgfnpdpsivragddyyiatstfewfpgvqihhskdlvhwhlvahplsttef
ldmkgnpdsggiwapdlsyadgkfwliytdvkvvdgmwkdchnylttaedikgpwskpil
lngagfdaslfhdpsgkkylvnmywdqrvyhhnfygialqeysvaeekligkpeiiykgt
diaytegphlyyindmyylmtaeggttyqhsetiarsktihgpyeiqpdypllsawkevh
nplqkcghaslvetqngqwylahltgrplpapagfpsrereqhafcplgretaiqkiewq
dgwpvvvggqqgsleveapdlpqqewaptyeerddfdkdtlninfqtlripfsehlgslt
arpgflrlygreslqskftqahiarrwqsfnfdagtsvefspnsfqqmagltcyyntenw
ssihvtwneekgriidlvtadngtfsmplagaeipipdevktvhfkvsvrgriyqyaysf
dgetfhtlpielpswklsddyvrgggfftgafvginaiditgtalpadfdyftykeld

    Sequence, based on observed residues (ATOM records): (download) 
    >3c2uB (B:)
mniqnpvlkgfnpdpsivragddyyiatstfewfpgvqihhskdlvhwhlvahplsttef
ldmkgnpdsggiwapdlsyadgkfwliytdvkvvdgmwkdchnylttaedikgpwskpil
lngagfdaslfhdpsgkkylvnmywdqrvyhhnfygialqeysvaeekligkpeiiykgt
diaytegphlyyindmyylmtaeggttyqhsetiarsktihgpyeiqpdypllsawkevh
nplqkcghaslvetqngqwylahltgrplpapagfpsrereqhafcplgretaiqkiewq
dgwpvvvggqqgsleveapdlpqqewaptyeerddfdkdtlninfqtlripfsehlgslt
arpgflrlygreslqskftqahiarrwqsfnfdagtsvefspnsfqqmagltcyyntenw
ssihvtwneekgriidlvtadngtfsmplagaeipipdevktvhfkvsvrgriyqyaysf
dgetfhtlpielpswklsddyvrgggfftgafvginaiditgtalpadfdyftykel

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3c2uC (C:)
mniqnpvlkgfnpdpsivragddyyiatstfewfpgvqihhskdlvhwhlvahplsttef
ldmkgnpdsggiwapdlsyadgkfwliytdvkvvdgmwkdchnylttaedikgpwskpil
lngagfdaslfhdpsgkkylvnmywdqrvyhhnfygialqeysvaeekligkpeiiykgt
diaytegphlyyindmyylmtaeggttyqhsetiarsktihgpyeiqpdypllsawkevh
nplqkcghaslvetqngqwylahltgrplpapagfpsrereqhafcplgretaiqkiewq
dgwpvvvggqqgsleveapdlpqqewaptyeerddfdkdtlninfqtlripfsehlgslt
arpgflrlygreslqskftqahiarrwqsfnfdagtsvefspnsfqqmagltcyyntenw
ssihvtwneekgriidlvtadngtfsmplagaeipipdevktvhfkvsvrgriyqyaysf
dgetfhtlpielpswklsddyvrgggfftgafvginaiditgtalpadfdyftykeld

    Sequence, based on observed residues (ATOM records): (download) 
    >3c2uC (C:)
mniqnpvlkgfnpdpsivragddyyiatstfewfpgvqihhskdlvhwhlvahplsttef
ldmkgnpdsggiwapdlsyadgkfwliytdvkvvdgmwkdchnylttaedikgpwskpil
lngagfdaslfhdpsgkkylvnmywdqrvyhhnfygialqeysvaeekligkpeiiykgt
diaytegphlyyindmyylmtaeggttyqhsetiarsktihgpyeiqpdypllsawkevh
nplqkcghaslvetqngqwylahltgrplpapagfpsrereqhafcplgretaiqkiewq
dgwpvvvggqqgsleveapdlpqqewaptyeerddfdkdtlninfqtlripfsehlgslt
arpgflrlygreslqskftqahiarrwqsfnfdagtsvefspnsfqqmagltcyyntenw
ssihvtwneekgriidlvtadngtfsmplagaeipipdevktvhfkvsvrgriyqyaysf
dgetfhtlpielpswklsddyvrgggfftgafvginaiditgtalpadfdyftykel

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3c2uD (D:)
mniqnpvlkgfnpdpsivragddyyiatstfewfpgvqihhskdlvhwhlvahplsttef
ldmkgnpdsggiwapdlsyadgkfwliytdvkvvdgmwkdchnylttaedikgpwskpil
lngagfdaslfhdpsgkkylvnmywdqrvyhhnfygialqeysvaeekligkpeiiykgt
diaytegphlyyindmyylmtaeggttyqhsetiarsktihgpyeiqpdypllsawkevh
nplqkcghaslvetqngqwylahltgrplpapagfpsrereqhafcplgretaiqkiewq
dgwpvvvggqqgsleveapdlpqqewaptyeerddfdkdtlninfqtlripfsehlgslt
arpgflrlygreslqskftqahiarrwqsfnfdagtsvefspnsfqqmagltcyyntenw
ssihvtwneekgriidlvtadngtfsmplagaeipipdevktvhfkvsvrgriyqyaysf
dgetfhtlpielpswklsddyvrgggfftgafvginaiditgtalpadfdyftykeld

    Sequence, based on observed residues (ATOM records): (download) 
    >3c2uD (D:)
mniqnpvlkgfnpdpsivragddyyiatstfewfpgvqihhskdlvhwhlvahplsttef
ldmkgnpdsggiwapdlsyadgkfwliytdvkvvdgmwkdchnylttaedikgpwskpil
lngagfdaslfhdpsgkkylvnmywdqrvyhhnfygialqeysvaeekligkpeiiykgt
diaytegphlyyindmyylmtaeggttyqhsetiarsktihgpyeiqpdypllsawkevh
nplqkcghaslvetqngqwylahltgrplpapagfpsrereqhafcplgretaiqkiewq
dgwpvvvggqqgsleveapdlpqqewaptyeerddfdkdtlninfqtlripfsehlgslt
arpgflrlygreslqskftqahiarrwqsfnfdagtsvefspnsfqqmagltcyyntenw
ssihvtwneekgriidlvtadngtfsmplagaeipipdevktvhfkvsvrgriyqyaysf
dgetfhtlpielpswklsddyvrgggfftgafvginaiditgtalpadfdyftykel