PDB entry 3c25

View 3c25 on RCSB PDB site
Description: crystal structure of noti restriction endonuclease bound to cognate dna
Deposited on 2008-01-24, released 2008-02-12
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NotI restriction endonuclease
    Species: Nocardia otitidiscaviarum [TaxId:1823]
    Gene: notIR
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: NotI restriction endonuclease
    Species: Nocardia otitidiscaviarum [TaxId:1823]
    Gene: notIR
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA (5'-d(*dcp*dgp*dgp*dap*dgp*dgp*dcp*dgp*dcp*dgp*dgp*dcp*dcp*dgp*dcp*dgp*dcp*dcp*dgp*dcp*dcp*dg)-3')
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: DNA (5'-d(*dcp*dgp*dgp*dcp*dgp*dgp*dcp*dgp*dcp*dgp*dgp*dcp*dcp*dgp*dcp*dgp*dcp*dcp*dtp*dcp*dcp*dg)-3')
    Species: synthetic, synthetic
  • Heterogens: FE, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3c25A (A:)
mrsdtsvepeganfiaeffghrvypevvsteaarndqatgtcpfltaaklvetscvkaet
srgvcvvntavdnerydwlvcpnraldplfmsaasrklfgygpteplqfiaaptladqav
rdgirewldrgvhvvayfqeklggelsisktdsspefsfdwtlaevesiypvpkikrygv
leiqtmdfhgsykhavgaidialvegidfhgwlptpagraalskkmegpnlsnvfkrtfy
qmaykfalsghqrcagtgfaipqsvwkswlrhlanptlidngdgtfslgdtrndsenawi
fvfeldpdtdasprplaphleirvnvdtlidlalrespraalgpsgpvatftdkvearml
rfwpktrrrrsttpggqrglfda

    Sequence, based on observed residues (ATOM records):
    >3c25A (A:)
anfiaeffghrvypevvsteaarndqatgtcpfltaaklvetscvkaetsrgvcvvntav
dnerydwlvcpnraldplfmsaasrklfgygpteplqfiaaptladqavrdgirewldrg
vhvvayfqeklggelsisktdsspefsfdwtlaevesiypvpkikrygvleiqtmdfhgs
ykhavgaidialvegidfhgwlptpagraalskkmegpnlsnvfkrtfyqmaykfalsgh
qrcagtgfaipqsvwkswlrhlanptlidngdgtfslgdtrndsenawifvfeldpdtda
sprplaphleirvnvdtlidlalrespraalgpsgpvatftdkvearmlrfwpk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3c25B (B:)
mrsdtsvepeganfiaeffghrvypevvsteaarndqatgtcpfltaaklvetscvkaet
srgvcvvntavdnerydwlvcpnraldplfmsaasrklfgygpteplqfiaaptladqav
rdgirewldrgvhvvayfqeklggelsisktdsspefsfdwtlaevesiypvpkikrygv
leiqtmdfhgsykhavgaidialvegidfhgwlptpagraalskkmegpnlsnvfkrtfy
qmaykfalsghqrcagtgfaipqsvwkswlrhlanptlidngdgtfslgdtrndsenawi
fvfeldpdtdasprplaphleirvnvdtlidlalrespraalgpsgpvatftdkvearml
rfwpktrrrrsttpggqrglfda

    Sequence, based on observed residues (ATOM records):
    >3c25B (B:)
anfiaeffghrvypevvsteaarndqatgtcpfltaaklvetscvkaetsrgvcvvntav
dnerydwlvcpnraldplfmsaasrklfgygpteplqfiaaptladqavrdgirewldrg
vhvvayfqeklggelsisktdsspefsfdwtlaevesiypvpkikrygvleiqtmdfhgs
ykhavgaidialvegidfhgwlptpagraalskkmegpnlsnvfkrtfyqmaykfalsgh
qrcagtgfaipqsvwkswlrhlanptlidngdgtfslgdtrndsenawifvfeldpdtda
sprplaphleirvnvdtlidlalrespraalgpsgpvatftdkvearmlrfwp

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.