PDB entry 3c0d

View 3c0d on RCSB PDB site
Description: Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1. Northeast Structural Genomics Consortium target VpR162
Class: oxidoreductase
Keywords: NESG, VpR162, Q87HB1, XRAY, Structure, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, OXIDOREDUCTASE
Deposited on 2008-01-19, released 2008-03-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.241
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein
    Species: Vibrio parahaemolyticus RIMD 2210633 [TaxId:223926]
    Gene: VPA1054
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q87HB1 (Start-110)
      • expression tag (111)
    Domains in SCOPe 2.05: d3c0da1
  • Chain 'B':
    Compound: Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein
    Species: Vibrio parahaemolyticus RIMD 2210633 [TaxId:223926]
    Gene: VPA1054
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3c0db_
  • Chain 'C':
    Compound: Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein
    Species: Vibrio parahaemolyticus RIMD 2210633 [TaxId:223926]
    Gene: VPA1054
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3c0dc_
  • Chain 'D':
    Compound: Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein
    Species: Vibrio parahaemolyticus RIMD 2210633 [TaxId:223926]
    Gene: VPA1054
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3c0dd_
  • Chain 'E':
    Compound: Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein
    Species: Vibrio parahaemolyticus RIMD 2210633 [TaxId:223926]
    Gene: VPA1054
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3c0de_
  • Chain 'F':
    Compound: Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein
    Species: Vibrio parahaemolyticus RIMD 2210633 [TaxId:223926]
    Gene: VPA1054
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3c0df_
  • Chain 'G':
    Compound: Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein
    Species: Vibrio parahaemolyticus RIMD 2210633 [TaxId:223926]
    Gene: VPA1054
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3c0dg_
  • Chain 'H':
    Compound: Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein
    Species: Vibrio parahaemolyticus RIMD 2210633 [TaxId:223926]
    Gene: VPA1054
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3c0dh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3c0dA (A:)
maaltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgiv
gdingemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylakelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3c0dA (A:)
ltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgivgdi
ngemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylakel

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3c0dB (B:)
maaltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgiv
gdingemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylakelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3c0dB (B:)
ltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgivgdi
ngemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylak

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3c0dC (C:)
maaltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgiv
gdingemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylakelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3c0dC (C:)
ltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgivgdi
ngemcvasplykqhfslksgqcledeahclktwrvtvddnqvcyla

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3c0dD (D:)
maaltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgiv
gdingemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylakelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3c0dD (D:)
ltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgivgdi
ngemcvasplykqhfslksgqcledeahclktwrvtvddnqvcyla

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3c0dE (E:)
maaltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgiv
gdingemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylakelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3c0dE (E:)
ltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgivgdi
ngemcvasplykqhfslksgqcledeahclktwrvtvddnqvcyla

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3c0dF (F:)
maaltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgiv
gdingemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylakelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3c0dF (F:)
ltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgivgdi
ngemcvasplykqhfslksgqcledeahclktwrvtvddnqvcyla

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3c0dG (G:)
maaltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgiv
gdingemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylakelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3c0dG (G:)
ltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgivgdi
ngemcvasplykqhfslksgqcledeahclktwrvtvddnqvcyla

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3c0dH (H:)
maaltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgiv
gdingemcvasplykqhfslksgqcledeahclktwrvtvddnqvcylakelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3c0dH (H:)
ltkvklcqlddlmpfigatvliegervalfyipdsgvyavqdwdpigkayvmsrgivgdi
ngemcvasplykqhfslksgqcledeahclktwrvtvddnqvcyla