PDB entry 3bz4

View 3bz4 on RCSB PDB site
Description: Crystal structure of Fab F22-4 in complex with a Shigella flexneri 2a O-Ag decasaccharide
Class: immune system
Keywords: O-Antigen, LPS, Shigella flexneri, antibody complex, IMMUNE SYSTEM
Deposited on 2008-01-17, released 2008-07-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fab F22-4 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BZ4 (0-End)
    Domains in SCOPe 2.08: d3bz4a1, d3bz4a2
  • Chain 'B':
    Compound: Fab F22-4 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BZ4 (0-End)
    Domains in SCOPe 2.08: d3bz4b_
  • Chain 'C':
    Compound: Fab F22-4 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BZ4 (0-End)
    Domains in SCOPe 2.08: d3bz4c1, d3bz4c2
  • Chain 'D':
    Compound: Fab F22-4 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BZ4 (0-End)
    Domains in SCOPe 2.08: d3bz4d_
  • Chain 'E':
    Compound: Fab F22-4 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BZ4 (0-End)
    Domains in SCOPe 2.08: d3bz4e1, d3bz4e2
  • Chain 'F':
    Compound: Fab F22-4 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BZ4 (0-End)
    Domains in SCOPe 2.08: d3bz4f_
  • Chain 'G':
    Compound: Fab F22-4 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BZ4 (0-End)
    Domains in SCOPe 2.08: d3bz4g1, d3bz4g2
  • Chain 'H':
    Compound: Fab F22-4 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3BZ4 (0-End)
    Domains in SCOPe 2.08: d3bz4h_
  • Heterogens: PD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3bz4A (A:)
divmtqaafsnpvtlgtsasiscrssksllhsdgitylywylqkpgqsphlliyhlsnla
sgvpdrfsssgsgtdftlrisrveaedvgiyycahnvelprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >3bz4A (A:)
divmtqaafsnpvtlgtsasiscrssksllhsdgitylywylqkpgqsphlliyhlsnla
sgvpdrfsssgsgtdftlrisrveaedvgiyycahnvelprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bz4B (B:)
evkveesggglvqpggsmkiscvvsgltfsnywmswvrqspekglewvaeirlksdnyat
yyaesvkgkftisrddsksrlylqmnnlrtedtgiyycflpmdywgqgtsvtvssakttp
psvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
ssvtvpsstwpsetvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >3bz4B (B:)
evkveesggglvqpggsmkiscvvsgltfsnywmswvrqspekglewvaeirlksdnyat
yyaesvkgkftisrddsksrlylqmnnlrtedtgiyycflpmdywgqgtsvtvssakttp
psvyplapgsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssvtvp
sstwpsetvtcnvahpasstkvdkkivpr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3bz4C (C:)
divmtqaafsnpvtlgtsasiscrssksllhsdgitylywylqkpgqsphlliyhlsnla
sgvpdrfsssgsgtdftlrisrveaedvgiyycahnvelprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >3bz4C (C:)
divmtqaafsnpvtlgtsasiscrssksllhsdgitylywylqkpgqsphlliyhlsnla
sgvpdrfsssgsgtdftlrisrveaedvgiyycahnvelprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3bz4D (D:)
evkveesggglvqpggsmkiscvvsgltfsnywmswvrqspekglewvaeirlksdnyat
yyaesvkgkftisrddsksrlylqmnnlrtedtgiyycflpmdywgqgtsvtvssakttp
psvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
ssvtvpsstwpsetvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >3bz4D (D:)
evkveesggglvqpggsmkiscvvsgltfsnywmswvrqspekglewvaeirlksdnyat
yyaesvkgkftisrddsksrlylqmnnlrtedtgiyycflpmdywgqgtsvtvssakttp
psvyplapgsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssvtvp
sstwpsetvtcnvahpasstkvdkkivpr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3bz4E (E:)
divmtqaafsnpvtlgtsasiscrssksllhsdgitylywylqkpgqsphlliyhlsnla
sgvpdrfsssgsgtdftlrisrveaedvgiyycahnvelprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >3bz4E (E:)
divmtqaafsnpvtlgtsasiscrssksllhsdgitylywylqkpgqsphlliyhlsnla
sgvpdrfsssgsgtdftlrisrveaedvgiyycahnvelprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3bz4F (F:)
evkveesggglvqpggsmkiscvvsgltfsnywmswvrqspekglewvaeirlksdnyat
yyaesvkgkftisrddsksrlylqmnnlrtedtgiyycflpmdywgqgtsvtvssakttp
psvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
ssvtvpsstwpsetvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >3bz4F (F:)
evkveesggglvqpggsmkiscvvsgltfsnywmswvrqspekglewvaeirlksdnyat
yyaesvkgkftisrddsksrlylqmnnlrtedtgiyycflpmdywgqgtsvtvssakttp
psvyplapgsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssvtvp
sstwpsetvtcnvahpasstkvdkkivpr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3bz4G (G:)
divmtqaafsnpvtlgtsasiscrssksllhsdgitylywylqkpgqsphlliyhlsnla
sgvpdrfsssgsgtdftlrisrveaedvgiyycahnvelprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >3bz4G (G:)
divmtqaafsnpvtlgtsasiscrssksllhsdgitylywylqkpgqsphlliyhlsnla
sgvpdrfsssgsgtdftlrisrveaedvgiyycahnvelprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3bz4H (H:)
evkveesggglvqpggsmkiscvvsgltfsnywmswvrqspekglewvaeirlksdnyat
yyaesvkgkftisrddsksrlylqmnnlrtedtgiyycflpmdywgqgtsvtvssakttp
psvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
ssvtvpsstwpsetvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >3bz4H (H:)
evkveesggglvqpggsmkiscvvsgltfsnywmswvrqspekglewvaeirlksdnyat
yyaesvkgkftisrddsksrlylqmnnlrtedtgiyycflpmdywgqgtsvtvssakttp
psvyplapgsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssvtvp
sstwpsetvtcnvahpasstkvdkkivpr